View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_4 (Length: 580)
Name: NF10271_low_4
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_4 |
 | |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 43726447 - 43725896
Alignment:
| Q |
1 |
atggaggaagaaagaa-acaaagtagaggaaaaatgaatatctatacataccaggaagctgacaaatgaacctaatccaacaccgaggaaccgaccgaga |
99 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43726447 |
atggagtaagaaagaatacaaagtagaggaaaaatgaatatctatacataccaggaagctgacaaatgaacctaatccaacaccgaggaaccgaccgaga |
43726348 |
T |
|
| Q |
100 |
taagaatctgcaataaaagcaccaaccacaggtgtgaaattgctagctgcagaggataagagaagaatctgagtagctttggcaagatgaagcctgtaac |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43726347 |
taagaatctgcaataaaagcaccaaccacaggtgtgaaattgctagctgcagaggataagagaagaatctgagtagctttggcaagatgaagcctgtaac |
43726248 |
T |
|
| Q |
200 |
ttcccatgaaatacaatatcatgttgggcaatagtcccaaacttgccatccttgcaagtgcctcattagctgcaacaataaaaccatatattatacaaca |
299 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43726247 |
ttcccatgaaatacaatatcatattgggcaatagtcccaaacttgccatccttgcaagtgcctcattagctgcaacaataaaaccatatattatacaaca |
43726148 |
T |
|
| Q |
300 |
aaattcaatccaaatattctctttaatgtgaatgaccaagtataagtataactagtaaagatctcattcaagattacactagtaacacctaagtcatcgt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43726147 |
aaattcaatccaaatattctctttaatgtgaatgaccaagtataagtataactagtaaagatcttgttcaagattacactagtaacacctaagtcatcgt |
43726048 |
T |
|
| Q |
400 |
ccatctctgctgaatcagagagatcgacgatgactccatagtttaatagagtgatatgtactagatatatagataaacggatagatagataacagaccaa |
499 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43726047 |
ccatctctgctgaatcagagagatcgacgatgactccatagtttaatagagtgatatgtactagatatatagataaacggatagatagataacagaccaa |
43725948 |
T |
|
| Q |
500 |
tgatgaaaggcatggtgataagaccacccttgcgtctttgaggttgttgaga |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43725947 |
tgatgaaaggcatggtgataagaccacccttgcgtctttgaggttgttgaga |
43725896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 46 - 266
Target Start/End: Complemental strand, 43697882 - 43697662
Alignment:
| Q |
46 |
cataccaggaagctgacaaatgaacctaatccaacaccgaggaaccgaccgagataagaatctgcaataaaagcaccaaccacaggtgtgaaattgctag |
145 |
Q |
| |
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||||||||||| |||| | | ||||||| ||||||||| ||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
43697882 |
cataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaattgctag |
43697783 |
T |
|
| Q |
146 |
ctgcagaggataagagaagaatctgagtagctttggcaagatgaagcctgtaacttcccatgaaatacaatatcatgttgggcaatagtcccaaacttgc |
245 |
Q |
| |
|
||||||||||||| ||||| |||||||||| | || |||| ||||| ||||| |||||| ||||||||||||||||| || ||||||||||||||||| |
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|
| T |
43697782 |
ctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccatcaaatacaatatcatgtttggtaatagtcccaaacttgc |
43697683 |
T |
|
| Q |
246 |
catccttgcaagtgcctcatt |
266 |
Q |
| |
|
|||||| |||||||||||||| |
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|
| T |
43697682 |
catcctagcaagtgcctcatt |
43697662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 46 - 266
Target Start/End: Complemental strand, 43712805 - 43712585
Alignment:
| Q |
46 |
cataccaggaagctgacaaatgaacctaatccaacaccgaggaaccgaccgagataagaatctgcaataaaagcaccaaccacaggtgtgaaattgctag |
145 |
Q |
| |
|
||||||||||| |||| | | ||||||| ||| ||||| | ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
43712805 |
cataccaggaaactgatagaagaacctattccgacacctaagaagcgaccaagataagaatctgcaataaaagcaccaatcacaggtgtgaaattgctag |
43712706 |
T |
|
| Q |
146 |
ctgcagaggataagagaagaatctgagtagctttggcaagatgaagcctgtaacttcccatgaaatacaatatcatgttgggcaatagtcccaaacttgc |
245 |
Q |
| |
|
||||||||||||| ||||| |||||||||| | || |||| ||||| ||||| |||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
43712705 |
ctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccatcaaatacaatatcatgttgggtaatagtcccacacttgc |
43712606 |
T |
|
| Q |
246 |
catccttgcaagtgcctcatt |
266 |
Q |
| |
|
|||| | |||||||| ||||| |
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|
| T |
43712605 |
catcttagcaagtgcttcatt |
43712585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 48 - 288
Target Start/End: Complemental strand, 43685329 - 43685089
Alignment:
| Q |
48 |
taccaggaagctgacaaatgaacctaatccaacaccgaggaaccgaccgagataagaatctgcaataaaagcaccaaccacaggtgtgaaattgctagct |
147 |
Q |
| |
|
||||||||| |||| || ||||||| ||||||||| ||||| ||||| | |||||||||||||||||||||| |||| | |||||||||||| | |||| |
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|
| T |
43685329 |
taccaggaaactgataatagaacctattccaacacctaggaatcgaccaatataagaatctgcaataaaagcagcaacaagaggtgtgaaatttccagct |
43685230 |
T |
|
| Q |
148 |
gcagaggataagagaagaatctgagtagctttggcaagatgaagcctgtaacttcccatgaaatacaatatcatgttgggcaatagtcccaaacttgcca |
247 |
Q |
| |
|
|||||||||| |||||| ||||| |||||| ||||||||||||| ||||| ||||| ||||||||||||||||| || || ||| |||||||| |
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|
| T |
43685229 |
gcagaggatatgagaagtatctgggtagctgtggcaagatgaagattgtaagaacccatcaaatacaatatcatgttaggtcctaatccagtacttgcca |
43685130 |
T |
|
| Q |
248 |
tccttgcaagtgcctcattagctgcaacaataaaaccatat |
288 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||| |
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| T |
43685129 |
tcctagcaagtgcctcattagctgcaacatcaaaaccatat |
43685089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 551
Target Start/End: Complemental strand, 43697576 - 43697509
Alignment:
| Q |
484 |
atagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgaggttgttgaga |
551 |
Q |
| |
|
|||||||| | |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
43697576 |
atagataagataccaattataaaaggcatggtgataagaccacccttgcgtctttgtggttgttgaga |
43697509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 544
Target Start/End: Complemental strand, 43712478 - 43712419
Alignment:
| Q |
485 |
tagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgaggtt |
544 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
43712478 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttctttgtggtt |
43712419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 538
Target Start/End: Complemental strand, 43685022 - 43684969
Alignment:
| Q |
485 |
tagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtcttt |
538 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
43685022 |
tagataagataccaatgataaaaggcatggtgacaagaccacccttgcttcttt |
43684969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 45 - 230
Target Start/End: Original strand, 26044 - 26229
Alignment:
| Q |
45 |
acataccaggaagctgacaaatgaacctaatccaacaccgaggaaccgaccgagataagaatctgcaataaaagcaccaaccacaggtgtgaaattgcta |
144 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||| | ||| ||||| | ||||||||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
26044 |
acataccaggaaactgacagcagaacctaatccaacacttaagaatcgacccaaataagaatctgcaataaaagcaccaaccacaggcatgaacttgctg |
26143 |
T |
|
| Q |
145 |
gctgcagaggataagagaagaatctgagtagctttggcaagatgaagcctgtaacttcccatgaaatacaatatcatgttgggcaa |
230 |
Q |
| |
|
||||||| ||||||| || ||||| |||||| | |||||||||| ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
26144 |
gctgcagcaaataagaggagtatctggttagcttggccaagatgaaggttgtaaggtcccatcaaatacaatatcatgttgggcaa |
26229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 45 - 230
Target Start/End: Complemental strand, 25272187 - 25272002
Alignment:
| Q |
45 |
acataccaggaagctgacaaatgaacctaatccaacaccgaggaaccgaccgagataagaatctgcaataaaagcaccaaccacaggtgtgaaattgcta |
144 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||| | ||| | ||| | |||||||||||||| |||||||||||||||||| |||| |||| |
|
|
| T |
25272187 |
acataccaggaaactgacagcagaacctaatccaacacttaagaatctacccaaataagaatctgcaacaaaagcaccaaccacaggcatgaacttgccg |
25272088 |
T |
|
| Q |
145 |
gctgcagaggataagagaagaatctgagtagctttggcaagatgaagcctgtaacttcccatgaaatacaatatcatgttgggcaa |
230 |
Q |
| |
|
||||||| |||||||| || ||||| |||||| | |||||||||| ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
25272087 |
gctgcagcagataagaggagtatctggttagcttggccaagatgaaggttgtaaggtcccatcaaatacaatatcatgttgggcaa |
25272002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 479 - 545
Target Start/End: Complemental strand, 25270128 - 25270062
Alignment:
| Q |
479 |
gatagatagataacagaccaatgatgaaaggcatggtgataagaccacccttgcgtctttgaggttg |
545 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
25270128 |
gatagatagataacgtaccaatgatgaaaggcatagtgataagaccacccttgctcctttgtggttg |
25270062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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