View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_41 (Length: 364)
Name: NF10271_low_41
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 38421492 - 38421147
Alignment:
| Q |
1 |
accgattgattattttgcagacccaaaaaacaaagagttggtgcagttgaagtttatagggttttaacaaagagggctgagaaagaatgaagactttgag |
100 |
Q |
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| T |
38421492 |
accgattgattattttgcagacccaaaaaacaaagagttggtgcagttgaagtttatagggttttaacaaagagggctgagaaagaatgaagactttgag |
38421393 |
T |
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| Q |
101 |
ttgtgccattatagtctgattttgatttgattgatgattatgcttttatttgtataaaaactaaacaataattcttatttatagtaaatacaagacacca |
200 |
Q |
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| T |
38421392 |
ttgtgccattatagtctgattttgatttgattgatgattatgcttttatttgtataaaaactaaacaataattcttatttatagt-aatacaagacacca |
38421294 |
T |
|
| Q |
201 |
attcttattgataataacaatgtaatatgaaaagtaatcttatgttatgtggtagtctaaaatattttaatcc--tatgactatgagataatctaaggta |
298 |
Q |
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| T |
38421293 |
attcttattgataataacaatgtaatatgaaaagtaatcttatgttatgtggtagtctaaaatattttaatcctatatgactatgagataatctaaggta |
38421194 |
T |
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| Q |
299 |
ctctaagataataccaaggtcttacaagatattttcatatcttataac |
346 |
Q |
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| T |
38421193 |
ctc-aagataataccaaggtcttacaagatattttcatatcttataac |
38421147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 38413313 - 38413251
Alignment:
| Q |
209 |
tgataataacaatgtaatatgaaaagtaatcttatgttatgtggtagtctaaaatattttaat |
271 |
Q |
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| T |
38413313 |
tgataataacaaagtaatacaaaaattacacttatgctatgtggtagtctaaaatattctaat |
38413251 |
T |
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