View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_44 (Length: 357)
Name: NF10271_low_44
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 13231799 - 13231447
Alignment:
| Q |
1 |
tctcaactctctgcctcttatcaacggctgaaagtggccctaatctgaaatcagcagcaaacatcaaagtctcatagacggtaagcataggaaaaagcct |
100 |
Q |
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| T |
13231799 |
tctcaactctctgcctcttatcaacagctgaaagtggccctaatctgaaatcagcagcaaacatcaaagtctcatagacagtaagcataggaaaaagcct |
13231700 |
T |
|
| Q |
101 |
atcttcttgcataatataagcagaagttcttttaatcaagcttgcattcacactaattccatccaatgaaacttttcctttaagactcccacttgcaatt |
200 |
Q |
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| T |
13231699 |
atcttcttgcataatataagcagaagttcttttaatcaagcttgcattcacactatttccatccaatgaaacttttcctttaagactcccacttgcaatt |
13231600 |
T |
|
| Q |
201 |
ctcccagcaagtccatccaataaagttgattttccagcaccacttggtcccattactgcagtgatacaaccctttggtgcataacctgttatatcatgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13231599 |
ctcccagcaagtccatccaataaagttgattttccagcaccacttggtcccattactgcagtgatacaaccctttggtgcataacctgttatatcatgca |
13231500 |
T |
|
| Q |
301 |
acaaatcaacatcttcatttgaccattttccatcaactttcttcttctctgtc |
353 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
13231499 |
acaaatccacatcttcattcgaccattttccatcaactttcttcttctttgtc |
13231447 |
T |
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