View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_46 (Length: 352)
Name: NF10271_low_46
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 27964715 - 27965044
Alignment:
| Q |
1 |
aaacaactaatcccggtccaagtagaacatactcaaattcgtctagaagatggaagaatgttacaggtttgaattatattctctctatgtcaactattgt |
100 |
Q |
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| T |
27964715 |
aaacaactaatcccggtccaagtagaacatactcaaattcgtctagaagatggaagaatgttgcaggtttgaattatattctctctatttcaactattgt |
27964814 |
T |
|
| Q |
101 |
tatcacttttatttacaaaattatctcactaggcagctattttaaaaaatgtgtgcaaaaaatacagtggaagttttgaaaaggtatagaaaatagcaaa |
200 |
Q |
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| T |
27964815 |
tatcacttttatttacaaaattatc--actaggtagctattgtaaaaaatgtgtgcaaaaaatacggtggaagttttgaaaaggtatagaaaatagcaaa |
27964912 |
T |
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| Q |
201 |
cctaatgaagttgtttttcccaatttttctacaaaacttgaaagtatactatgaagaaaatataatatatgatatttttataattagaaagcagaacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27964913 |
cctaatgaagttgtttttcccaatttttctacaaaacttgaaagtatactatgaagaaaatataatatatgatatttttataattagaaagcagaacaaa |
27965012 |
T |
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| Q |
301 |
aacaatgttaaaatacacatgtaaaaagttta |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27965013 |
aacaatgttaaaatacacatgtaaaaagttta |
27965044 |
T |
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