View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_low_47 (Length: 347)
Name: NF10271_low_47
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 333
Target Start/End: Complemental strand, 27112283 - 27111957
Alignment:
| Q |
6 |
cacagacacttgtaccaataccatttagagtaatgcatttattgatcctgcactgaatcatgatttggaatactatgtgaatcttagtgaaggtcagaat |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
27112283 |
cacaaacacttgtaccaataccatttagagtaatgcatttattgatcctgcactgaatcatgatttggaatactatgtgaatcttagtgaagatccgaat |
27112184 |
T |
|
| Q |
106 |
tctataatcgtttcccccaagctttgatggttctaactacttggcatgaactcgagcaatgcgcaaagccttgggcgcgaagaacaaatttcaatttgtt |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27112183 |
tctataatcgtttcccccaagctt-gatggttctaactacttagcatggacttgagcaatgcgcaaagccttgggcgcgaagaacaaatttcaatttgtt |
27112085 |
T |
|
| Q |
206 |
aatagtaccattctagttcctgctcttggggaccctaaccgtcaagcatggtaacactatgattcaaggacattgccaagactaaggttgaagattgata |
305 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27112084 |
aatagtaccattttagttcctgctcttggggaccctaaccgtcaagcatggtaacactacgattcaaggacattgccaagactaaggttgaagattgata |
27111985 |
T |
|
| Q |
306 |
gttccagcaatttgtgcaatgacacaat |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
27111984 |
gttccagcaatttgtgcaatgacacaat |
27111957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University