View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_low_49 (Length: 344)
Name: NF10271_low_49
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_49 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 28654476 - 28654294
Alignment:
| Q |
18 |
gcttttccctgtacataaaaatacatgacaatattaaattaaaattagagatgaaattaatgagtcaatatctnnnnnnntaa-taattagaaatggtta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||| |
|
|
| T |
28654476 |
gcttttccctgtacataaaaatacatgacaatattaaattaaaattagagatgaaat----gattcaatatctaaaaaaataaataattagaaatggtta |
28654381 |
T |
|
| Q |
117 |
gaatagatcttaagtccacaatggatatagatttcttgcattcacgtaattagagttgccaatttgaacaatcaaattaagtttcga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28654380 |
gaatagatcttaagtccacaatggatatagatttcttgcattcacgtaattagagttgccaatttgaactatcaaattaagtttcga |
28654294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 28654272 - 28654204
Alignment:
| Q |
258 |
gttagatggatcacatgattgtgataaatatatgattttctaatgataagaatctcgtgttggcttgat |
326 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28654272 |
gttagacggatcacatgattgtgacaaatatatgattttctaatgataagaatctcgtgttggcttgat |
28654204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University