View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_5 (Length: 574)

Name: NF10271_low_5
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_5
NF10271_low_5
[»] chr4 (7 HSPs)
chr4 (5-557)||(39521374-39521926)
chr4 (5-445)||(39544279-39544716)
chr4 (5-534)||(39576039-39576571)
chr4 (68-529)||(39511156-39511617)
chr4 (72-421)||(39525007-39525356)
chr4 (89-488)||(39580628-39581016)
chr4 (5-80)||(39581037-39581109)
[»] chr7 (2 HSPs)
chr7 (153-341)||(3331509-3331696)
chr7 (341-385)||(3331271-3331315)


Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 5 - 557
Target Start/End: Complemental strand, 39521926 - 39521374
Alignment:
Q  5 ttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatcaccagtgtcttcacctctcaaccaa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39521926 ttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaaagtaacaagtcaatcaccagtgtcttcacctctcaaccaa 39521827  T
Q  105 acagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcatttcttttcattctcttcaccaa 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  39521826 acagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaagcaacacttacatggtacgtttccatttcttttcattctcttcaccaa 39521727  T
Q  205 ctaacctttcctctgcaaaattcaccgtttcagttcctggtttcattctgttacataatttcaacgctgaaaacaccaccaactctcctttagtaaaaga 304  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39521726 ctaacctttcctctgcaaaattcaccgtttcagttcctggtttccttctgttacataatttcaacgctgaaaacaccaccaactctcctttagtaaaaga 39521627  T
Q  305 gtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcatcatttgcgtttgttaatgcaattgaactctttatgctccct 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39521626 gtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcatcatttgcgtttgttaatgcaattgaactctttatgctccct 39521527  T
Q  405 cttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtcggggcttaactacttatagtggcggtttacactcacaacgatcgt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39521526 cttcatttaatccccgattcagtagcacgtttcaattacatcggttctactggtcggggcttaactacttatagtggcggtttacactcacaacgatcgt 39521427  T
Q  505 tggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaacc 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39521426 tggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaacc 39521374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 445
Target Start/End: Complemental strand, 39544716 - 39544279
Alignment:
Q  5 ttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatcaccagtgtcttcacctctcaaccaa 104  Q
    |||||||||||||||||||| | ||||||| |||| |   |||||  ||||   |||||| |||||||||||||||||||||| |||||||||| |||||    
T  39544716 ttatattggtgaatcaaaccctacttacccaaaaacaagtttcagaaaaag---ctccaaagtaacaagtcaatcaccagtgttttcacctctctaccaa 39544620  T
Q  105 acagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcatttcttttcattctcttcaccaa 204  Q
    |||||||| || |||| |||| | ||||||||||||||    ||| | ||||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  39544619 acagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtatgtttccatttcttttcattctcttcaccaa 39544520  T
Q  205 ctaacctttcctctgcaaaattcaccgtttcagttcctggtttcattctgttacataatttcaacgctgaaaacaccaccaactctcctttagtaaaaga 304  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  39544519 ctaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctgttacaaaatttcaactctgaaaacaccaccaactcttctttagtaaaaga 39544420  T
Q  305 gtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcatcatttgcgtttgttaatgcaattgaactctttatgctccct 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||| ||||||    
T  39544419 gtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcttcatttgcgttttttaatgcatttgaactctttattctccct 39544320  T
Q  405 cttcatttaatccccgattcagtagcacgtttcaattacat 445  Q
    ||||||||||| ||| ||||| |||| ||||||||||||||    
T  39544319 cttcatttaatacccaattcaatagctcgtttcaattacat 39544279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 5 - 534
Target Start/End: Complemental strand, 39576571 - 39576039
Alignment:
Q  5 ttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatcaccagtgtcttcacctctcaaccaa 104  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||| |||| |  ||||  | ||| | || |||| ||||||||||||||||  |||||    
T  39576571 ttatattggtgaatcaaaccatgcttaccctaaaaaatcattcagccaaagaagttccatagaaaccaatccatcatcagtgtcttcacctctttaccaa 39576472  T
Q  105 acagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcatttcttttcattctcttcaccaa 204  Q
    |||||||||||||||| |||  | || ||||| |||||    ||| | |||||||||||||| ||||||||||| | |||||||||||||||||||||||    
T  39576471 acagcaagaattttccattctgaatcctcctacgaattttctaccataccaaacaacacttatatggtacgtttccgtttcttttcattctcttcaccaa 39576372  T
Q  205 ctaacctttcctctgcaaaattcaccgtttcagttcctggtttcattctgttacataatttcaacgctgaaaacaccaccaactctcctttagtaaaaga 304  Q
    |||| |||||| |||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  39576371 ctaaactttccactgcaaaattcaacatttccgttcctggtttccttctgttacataatttcaacgctgaaaacaccaccaaatctgctttagtaaaaga 39576272  T
Q  305 gtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcatcatttgcgtttgttaatgcaattgaactctttatgctccct 404  Q
    |||||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||     
T  39576271 gtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgcgtttgttaatgcaatagaactctttatgcttccg 39576172  T
Q  405 cttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtc---ggggcttaactacttatagtggcggtttacactcacaacgat 501  Q
     ||||||||||||| |||||| |  ||| ||||  |||||  |  |||  || ||   | |||||| ||||||||| ||||||||||||||||||||||     
T  39576171 gttcatttaatccctgattcaatgccacatttctcttacaaagaatctggtgttcgaggaggcttatctacttatattggcggtttacactcacaacgag 39576072  T
Q  502 cgttggaaaccaaactccgtcttaacgtcggtg 534  Q
    | |||||||| ||||  ||| ||||||||||||    
T  39576071 ccttggaaacaaaacatcgttttaacgtcggtg 39576039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 68 - 529
Target Start/End: Complemental strand, 39511617 - 39511156
Alignment:
Q  68 aacaagtcaatcaccagtgtcttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttac 167  Q
    ||||| ||||||| ||||  ||||| ||||| ||||||| ||||| ||||||| |||| | ||||  || |||||||||||| | ||||||||||| ||     
T  39511617 aacaaatcaatcatcagttccttcatctctctaccaaactgcaaggattttccgttccgaatcttggtacgaattcaaaaccatcccaaacaacacctat 39511518  T
Q  168 atggtacgttttcatttcttttcattctcttcaccaactaacctttcctctgcaaaattcaccgtttcagttcctggtttcattctgttacataatttca 267  Q
    ||||||||||| |||||| ||||||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  39511517 atggtacgtttccatttcctttcattctctacaccaactaaactttccactgcaaaattcactgtttcagttcctggtttcattctgttacaaaatttca 39511418  T
Q  268 acgctgaaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcatcatt 367  Q
    ||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||| |    
T  39511417 acgctgaaaacaccaccaactctcctttagtaaaagaatactacgttcaaatcatcagaaaaagattcaaaatcactttcacacctcaaaaatcatcact 39511318  T
Q  368 tgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtcggggctta 467  Q
     || |||||||| ||||| ||||||||| |||||||  ||||||||||||| ||||||||    ||||| | |||||  |  |||| |  ||  ||||||    
T  39511317 cgcatttgttaacgcaatagaactctttgtgctccccgttcatttaatccctgattcagtgttgcgttttacttacaaagaatctagttctccaggctta 39511218  T
Q  468 actacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgt 529  Q
     ||| |||||||||||||||| ||||||||||| | |||||||| ||||  |||||||||||    
T  39511217 tctaattatagtggcggtttaaactcacaacgagctttggaaacgaaacatcgtcttaacgt 39511156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 72 - 421
Target Start/End: Complemental strand, 39525356 - 39525007
Alignment:
Q  72 agtcaatcaccagtgtcttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttacatgg 171  Q
    ||||||||| ||||| ||||||||||| ||||||||||||| || || | |||| | ||||  || || ||||||||||| ||||||||||| |||||||    
T  39525356 agtcaatcatcagtgccttcacctctctaccaaacagcaaggatatttcattccgaatctttatacgagttcaaaaccgtaccaaacaacacctacatgg 39525257  T
Q  172 tacgttttcatttcttttcattctcttcaccaactaacctttcctctgcaaaattcaccgtttcagttcctggtttcattctgttacataatttcaacgc 271  Q
    ||||||| ||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||| | ||    
T  39525256 tacgtttccatttcttttcattctcttcaccacttaacctttccactgcaaaattcaccgtttcagtccctggtttcattctgttacaaaatttcgatgc 39525157  T
Q  272 tgaaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcatcatttgcg 371  Q
      |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||| | ||||||||||     
T  39525156 aaaaaacaccaccaactctcctttagtaaaagagtattaccttaaaatcatcagaaaaaaattcaaaatcacgttcacacctcaaaaagcatcatttgcc 39525057  T
Q  372 tttgttaatgcaattgaactctttatgctccctcttcatttaatccccga 421  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||    
T  39525056 tttgctaatgcaatagaactctttatgctccctgttcatttaatccccga 39525007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 89 - 488
Target Start/End: Complemental strand, 39581016 - 39580628
Alignment:
Q  89 ttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcatttcttt 188  Q
    |||||||||| ||||||||||||  || |||| |||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  39581016 ttcacctctctaccaaacagcaattatattcccttccaaatctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgtttccatttcttt 39580917  T
Q  189 tcattctcttcaccaactaacctttcctctgcaaaattcaccgtttcagttcctggtttcattctgttacataatttcaacgctgaaaacaccaccaact 288  Q
      |||||||| ||||||||| |||||| |||||||||||| ||||||  |||| ||||||  ||||||||| |||||      |||       |  ||||    
T  39580916 ctattctctttaccaactaatctttccactgcaaaattcaacgtttcctttccaggtttctctctgttacaaaattt------tga------tataaact 39580829  T
Q  289 ctccttt-agtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcatcatttgcgtttgttaatgcaattg 387  Q
    |  |||| | | ||||| |||| | ||||||||| | | |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  39580828 ccgctttcaattaaagaatatttctttaaaatcacccgtaaaagattcaaaatcactttcacacctcaaacctcatcatttgcgtttgttaatgcaatgg 39580729  T
Q  388 aactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtcggggcttaactacttatagtggcggttt 487  Q
    |||||||||| |||||   |||||| |||||||| |||||  ||| ||||||||||||   ||||| |||||  |||||| || |||| | |||||||||    
T  39580728 aactctttatactccccactcatttcatccccgaatcagtcacacatttcaattacattaattctactggtcaaggcttatcttcttacactggcggttt 39580629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 39581109 - 39581037
Alignment:
Q  5 ttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatca 80  Q
    |||||||||||||||||||| | |||| ||||||| | | |||||| ||||   |||||| |||||||||||||||    
T  39581109 ttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaag---ctccaaagtaacaagtcaatca 39581037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 153 - 341
Target Start/End: Original strand, 3331509 - 3331696
Alignment:
Q  153 ccaaacaacacttacatggtacgttttcatttcttttcattctcttcaccaactaacctttcctctgcaaaattcaccgtttcagttcctggtttcattc 252  Q
    ||||||||||| |||||||||||||| |||||| |||||||||||||||||| |||||||||| ||||||| |||| | |||| ||| | |||||| |||    
T  3331509 ccaaacaacacctacatggtacgtttccatttcctttcattctcttcaccaattaacctttccactgcaaa-ttcaacatttctgtttccggtttccttc 3331607  T
Q  253 tgttacataatttcaacgctgaaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatc 341  Q
    |||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3331608 tgttaactaatttcgacgctaaaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcataaaaagattcacaatc 3331696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 341 - 385
Target Start/End: Original strand, 3331271 - 3331315
Alignment:
Q  341 cactttcacacctcaaacatcatcatttgcgtttgttaatgcaat 385  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  3331271 cactttcacacctcaaacatcatcatttgcatttgttaatgcaat 3331315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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