View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_low_52 (Length: 336)
Name: NF10271_low_52
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_52 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 1744334 - 1744643
Alignment:
| Q |
19 |
gaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatcaccaagggcactatttatagcct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1744334 |
gaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatcaccaagggcactatttatagcct |
1744433 |
T |
|
| Q |
119 |
ctgatgaagctttaaaatattgatcaataatatttttaaattaatgttgctccacattctcttattcttatttcctagtgtcaagatggatgcctacaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1744434 |
ctgatgaagctttaaaatattgatcaataatatttttaaattaatgttgctccacattgtcttattcttatttcctagtgtcaagatggatgcctactaa |
1744533 |
T |
|
| Q |
219 |
aaatgcatgattttaatattttaaccaaaatcaggggcggagctaggttttatacatcgggggaccaagtcttaaaaagtataatttta--gtgtcttat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
1744534 |
caatgcatgattttaatattttaaccaaaatcaggggcggagctaggttttatacatcgggggaccaagtcttagaaagtataattttagtgtgtcctat |
1744633 |
T |
|
| Q |
317 |
gaaccctttg |
326 |
Q |
| |
|
|||||||||| |
|
|
| T |
1744634 |
gaaccctttg |
1744643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 1722225 - 1722425
Alignment:
| Q |
19 |
gaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatcctgagttggctatca--------ccaagggcactatt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
1722225 |
gaaatacataaagccaataagaagctcaaataatactttcgatattccattttttgaatgatccttagttggctataaaacgagtaccaagggcactata |
1722324 |
T |
|
| Q |
111 |
tatagcctctgatgaagctttaaaatattgatcaataata-tttttaaattaatgttgctccacattctcttattcttatttcctagtgtcaagatggat |
209 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| | ||||||||||| |
|
|
| T |
1722325 |
tatagcctttgatgatgctttaaaatattgatcaataataatttttaaattaatgttgctccacattctcttcttcctatttcctaatctcaagatggat |
1722424 |
T |
|
| Q |
210 |
g |
210 |
Q |
| |
|
| |
|
|
| T |
1722425 |
g |
1722425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University