View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_53 (Length: 332)
Name: NF10271_low_53
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 40609447 - 40609139
Alignment:
| Q |
1 |
ttaagaatcatcataatattgatagaaaatttatttaacaaagataaaatgaatttataattgttttagtctttgtcattagaagatgttgagtactttc |
100 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40609447 |
ttaagaatcatcgtaatattgatagaaaacttatttaacaaagataaaatgaatttataattgttttagtctttgtcattagaagatgttgagtactttc |
40609348 |
T |
|
| Q |
101 |
ctaatatccttgttgttaactgatt----atcgtcacttcaccttaatagcatcaacatttatttatatttattggtttggaataatgtacgtgatctgg |
196 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40609347 |
ctaatatccttgttgttaactgattatcgatcgtcccttcaccttaatagcatcaacatttatttatatttattggtttggaataatgtacgtggtctgg |
40609248 |
T |
|
| Q |
197 |
attaaactacaatttaagcaaatacgttgaatgtatcannnnnnnnnatagtaaatatatcatatgttgaatgtaccatatatcatatcgtacacaacaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40609247 |
attaaactacaatttaagcaaatacgttgaatgtatcattttttt---tagtaaatatatcatatgttgaatgtaccatatatcatatcgtacacaacaa |
40609151 |
T |
|
| Q |
297 |
tcttctttgcta |
308 |
Q |
| |
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|||| ||||||| |
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| T |
40609150 |
tcttatttgcta |
40609139 |
T |
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