View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_55 (Length: 321)
Name: NF10271_low_55
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 53464854 - 53464545
Alignment:
| Q |
1 |
taattaaaatatttaattacccaatatgaagattaattaattatctgtattgnnnnnnngtctttgaaaattaatgtatgatattaattactaattatta |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53464854 |
taattaaaatatataattacccaatatgaagattaattaattatctgtattgtttttttgtctttgaaaattaatgtatgatattaattactaattatta |
53464755 |
T |
|
| Q |
101 |
tttaagcatatatagtgttgtgagttgtgacccttatcaacaagcaaagtagagtttgaacttaaaccatgcagtgttccatcagatttccttctttagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53464754 |
tttaagcatatatagtgttgtgagttgtgacccttatcaacaagcaaagtagagtttgaacttaaaccatgcagtgttccatcagatttccttctttggt |
53464655 |
T |
|
| Q |
201 |
attgcaaaatagacaagataaaccaccttgactagacgaaatagcgaacatgattgaagaccnnnnnnngcattttgtcttaaatcaaattaaggtgcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53464654 |
attgcaaaatagacaagataaaccaccttgactagacgaaatagcgaacatgattgaagacctttttttgcattttgtcttaaatcaaattaaggtgcac |
53464555 |
T |
|
| Q |
301 |
tacacctatg |
310 |
Q |
| |
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|||||||||| |
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| T |
53464554 |
tacacctatg |
53464545 |
T |
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