View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_58 (Length: 316)
Name: NF10271_low_58
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_58 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 14 - 316
Target Start/End: Complemental strand, 36463172 - 36462870
Alignment:
| Q |
14 |
gatctaggaataaattggagtgtgaagcagttaattctatattgttcatgtggcataattgctggcttaattggtggcttacttggtcttggtggaggat |
113 |
Q |
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| T |
36463172 |
gatcaaggaataaattggagtgtgaagcagttaattctatattgttcatgcggcataattgctggcttaattggtggcttacttggtcttggtggaggat |
36463073 |
T |
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| Q |
114 |
ttatcttagcgccactcttccttggacttggaatccctcctcaggtatctttattttatttcttctcttttccataatatacatatatatactaattaaa |
213 |
Q |
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| T |
36463072 |
ttatcttagcgccactcttccttggacttggaatccctcctcaggtatctttattttatttcttctcttttccataatatacatatatatactaattaaa |
36462973 |
T |
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| Q |
214 |
tgagatttatgagagtatgtttgcaattctgattcgataattttctttgaaggtatcaagtgctacatccacttttgcaatgacattttctgcatctatg |
313 |
Q |
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| T |
36462972 |
tgagatttatgagagtatgtttgcaattctgattcgataattttctttgaaggtatcaagtgctacatccacttttgcaatgacattttctgcatctatg |
36462873 |
T |
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| Q |
314 |
tct |
316 |
Q |
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||| |
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| T |
36462872 |
tct |
36462870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 36472322 - 36472176
Alignment:
| Q |
14 |
gatctaggaataaattggagtgtgaagcagttaattctatattgttcatgtggcataattgctggcttaattggtggcttacttggtcttggtggaggat |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |
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| T |
36472322 |
gatcaaggaataaattggagtgtgaagcagttaattctatattgttcatgtggcataattgctggaataatcggtggcttgcttggtcttggtggaggat |
36472223 |
T |
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| Q |
114 |
ttatcttagcgccactcttccttggacttggaatccctcctcaggta |
160 |
Q |
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| T |
36472222 |
ttatcttagggccacttttcattggacttggaatccctcctcaggta |
36472176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 36472064 - 36472000
Alignment:
| Q |
252 |
aattttctttgaaggtatcaagtgctacatccacttttgcaatgacattttctgcatctatgtct |
316 |
Q |
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| T |
36472064 |
aattttctattaaggtggcaagtgctacatccacttttgcaatgacattttctgcatctatgtct |
36472000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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