View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_59 (Length: 311)
Name: NF10271_low_59
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_59 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 37925828 - 37926122
Alignment:
| Q |
17 |
aaaggagaggtaaataagaacctgtaagaaggtggaggagatggcgacgaggaaagtggcagcagcccaaagaaaagcacctagagcaataacatgtgca |
116 |
Q |
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| T |
37925828 |
aaaggagaggtaaataagaacctgtaagaaggtggaggagatggcgacgaggaaagtggcagcagcccaaagaaaagcacctagagcaataacatgtgca |
37925927 |
T |
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| Q |
117 |
cgattgtgtcgcgtggccaggtaagcagccagagggtaacagaatgattgaacaagggatcggaaaagagtgagggaacctaacgcagttggattagcgt |
216 |
Q |
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| T |
37925928 |
cgattgtgtcgcgtggccaggtaagcagccagagggtaacagaatgattgaacaagggatcggaaaagagtgagggaacctaacgcagttggatcagcgt |
37926027 |
T |
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| Q |
217 |
taagttcagcaccaacctctttgtatactcctggaagcaatgactcatcagctctctgcataatacttgctagattcaccagcaccaatgtcaat |
311 |
Q |
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| T |
37926028 |
taagttcagcaccaacctctttgtatactcctggaagcaatgactcatcagctctctgcataatacttgctagatttaccagcaccaatgtcaat |
37926122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 31 - 307
Target Start/End: Original strand, 37922259 - 37922535
Alignment:
| Q |
31 |
taagaacctgtaagaaggtggaggagatggcgacgaggaaagtggcagcagcccaaagaaaagcacctagagcaataacatgtgcacgattgtgtcgcgt |
130 |
Q |
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| T |
37922259 |
taagaacctgcaagaaggtggaggagacagcaacgaggaatgtagcggcagcccaaagaaaagcaccaagagcaatgacatgtgcacgattgtgtcgtgt |
37922358 |
T |
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| Q |
131 |
ggccaggtaagcagccagagggtaacagaatgattgaacaagggatcggaaaagagtgagggaacctaacgcagttggattagcgttaagttcagcacca |
230 |
Q |
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| T |
37922359 |
ggcaaggtaagcagcaagagggtaacagaatgcttgaaccagggatcggaaaagagtgagagaacctaacgcagttgggtcagcgttgagttcatcacca |
37922458 |
T |
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| Q |
231 |
acctctttgtatactcctggaagcaatgactcatcagctctctgcataatacttgctagattcaccagcaccaatgt |
307 |
Q |
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| T |
37922459 |
atctctttgtatactcctggtaacaatgactcatcagctctctccataatacctgctagatttaccagtaccaatgt |
37922535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 36 - 307
Target Start/End: Original strand, 37937538 - 37937809
Alignment:
| Q |
36 |
acctgtaagaaggtggaggagatggcgacgaggaaagtggcagcagcccaaagaaaagcacctagagcaataacatgtgcacgattgtgtcgcgtggcca |
135 |
Q |
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| T |
37937538 |
acctgtaaaaaggtagatgagatggcaacgaggaacgtagcggcagcccaaagaaaagcaccaagagcaataacatgtgaacgattgtaacgggtggcga |
37937637 |
T |
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| Q |
136 |
ggtaagcagccagagggtaacagaatgattgaacaagggatcggaaaagagtgagggaacctaacgcagttggattagcgttaagttcagcaccaacctc |
235 |
Q |
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| T |
37937638 |
ggtaagtagcaagagggtaacagaatgattgaacaagtgatcggaaaagagtgagagaacctaaggcggtggggtcagcgttaagagcagcaccgacttc |
37937737 |
T |
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| Q |
236 |
tttgtatactcctggaagcaatgactcatcagctctctgcataatacttgctagattcaccagcaccaatgt |
307 |
Q |
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| T |
37937738 |
tttgtatactccaggtaacaatgattcatcggctcgttccataatacctgctagattcaccagcaccaatgt |
37937809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 26285329 - 26285169
Alignment:
| Q |
36 |
acctgtaagaaggtggaggagatggcgacgaggaaagtggcagcagcccaaagaaaagcacctagagcaataacatgtgcacgattgtgtcgcgtggcca |
135 |
Q |
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| T |
26285329 |
acctgaaagaaagtggaggagaaggcaacaagaaaagtagcagcagcccaaagaaaagcaccaagagcaataacatgagcacgattatgacgcgtggcga |
26285230 |
T |
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| Q |
136 |
ggtaagcagccagagggtaacagaatgattgaacaagggatcggaaaagagtgagggaacc |
196 |
Q |
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| T |
26285229 |
gatacgcggcaattgggtaacaagaagattgaacaatggatcgaaagagagtaagcgaacc |
26285169 |
T |
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