View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_60 (Length: 307)

Name: NF10271_low_60
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_60
NF10271_low_60
[»] chr8 (1 HSPs)
chr8 (16-278)||(14261067-14261329)
[»] chr7 (4 HSPs)
chr7 (18-277)||(10575273-10575532)
chr7 (17-251)||(354316-354551)
chr7 (16-278)||(39954880-39955142)
chr7 (17-249)||(10580701-10580928)
[»] chr3 (7 HSPs)
chr3 (16-278)||(21584632-21584894)
chr3 (16-271)||(24981938-24982193)
chr3 (16-278)||(25084923-25085185)
chr3 (24-271)||(24919929-24920176)
chr3 (16-278)||(24923495-24923757)
chr3 (16-278)||(31825592-31825854)
chr3 (16-271)||(24497294-24497549)
[»] chr4 (2 HSPs)
chr4 (16-250)||(22898466-22898700)
chr4 (16-250)||(22950134-22950368)
[»] chr2 (2 HSPs)
chr2 (16-259)||(41027476-41027719)
chr2 (265-307)||(41705991-41706033)
[»] chr5 (2 HSPs)
chr5 (265-307)||(30287957-30287999)
chr5 (177-271)||(26358744-26358838)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 14261067 - 14261329
Alignment:
Q  16 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14261067 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaaaatcttcaacacacc 14261166  T
Q  116 gcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  14261167 gcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttctcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacga 14261266  T
Q  216 agtactttgcgatgtctctttgcacctccctttcctagtcccttacctccctttccgcgacct 278  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  14261267 agcactttgcgatgtctctttgcacctccctttcctaatcccttacctccctttccacgacct 14261329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 10575532 - 10575273
Alignment:
Q  18 taaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccgc 117  Q
    |||||||||||||||||||| || || |||||||||||||| ||||| || ||||||||||||||||| |||||||||||||| |||||||||||||| |    
T  10575532 taaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttataacattctccaagaagatcttcaacacacctc 10575433  T
Q  118 gagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcgaag 217  Q
      ||||| || || ||||| || || ||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || || ||    
T  10575432 ttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcgccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggag 10575333  T
Q  218 tactttgcgatgtctctttgcacctccctttcctagtcccttacctccctttccgcgacc 277  Q
     || |||||||||||||||||||| |||||||||| ||| |||||||||||||| |||||    
T  10575332 aaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctttccacgacc 10575273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 354551 - 354316
Alignment:
Q  17 ataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccg 116  Q
    ||||||||||||||||||||| |  ||||||||||| ||||| ||||| || ||||||||||| |  ||| |||||| |||||| ||||||||||| ||     
T  354551 ataaacaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcct 354452  T
Q  117 cgagtttcttcgtaaatcaac-ccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
    |   |||| || || || ||  || || || |||||||| || ||||||||||| ||||  ||||||||||| ||||| |||||||| |||||| ||| |    
T  354451 cttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaa 354352  T
Q  216 agtactttgcgatgtctctttgcacctccctttcct 251  Q
    || || |||| ||||| |||||||||||||||||||    
T  354351 agaaccttgctatgtcactttgcacctccctttcct 354316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 39954880 - 39955142
Alignment:
Q  16 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacacc 115  Q
    |||| ||||||||||| || ||||| || |||||||| ||||| ||||| || ||||||||||| |  ||||||||||| |  || ||||| |  |||||    
T  39954880 catacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaagaaagatcttgagaacacc 39954979  T
Q  116 gcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
    |||||| |||||||| || |  ||||| ||||||||||| || || |  || || |  || |||||||| || || || || ||||||||||| ||||||    
T  39954980 gcgagtctcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttgtcgcga 39955079  T
Q  216 agtactttgcgatgtctctttgcacctccctttcctagtcccttacctccctttccgcgacct 278  Q
    || || || |  || |||||||| ||||||||||| | |||||| ||||| ||||| ||||||    
T  39955080 agaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacct 39955142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 10580928 - 10580701
Alignment:
Q  17 ataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccg 116  Q
    ||||||||||||||||||||| |  |||||||||     ||| ||||| || |||||||||||    |||  ||||| |||||| ||||||||||  ||     
T  10580928 ataaacaacatccatagcagtcagagtcttcctc-----atgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcct 10580834  T
Q  117 cgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcgaa 216  Q
    |   |||| || || ||||| || || || |||||||| ||  |||||||||| ||||  ||||||||||| ||||| |||||||| |||||| ||| ||    
T  10580833 cttatttcctcatagatcaaaccactgatcctcttcacaccaactcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaa 10580734  T
Q  217 gtactttgcgatgtctctttgcacctccctttc 249  Q
    | || |||| || || |||||||||||||||||    
T  10580733 gaaccttgcaatatcactttgcacctccctttc 10580701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 21584632 - 21584894
Alignment:
Q  16 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacacc 115  Q
    |||||||||||||||||||||| || ||||||||||| ||||| ||||| |||||||| ||||| |  ||||||||||||||||| ||||| |  || ||    
T  21584632 cataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcc 21584731  T
Q  116 gcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
     |  ||||| || |||||||| || || |||||||| || || ||||||||||| ||||| ||||||||||| || |||||||| || |||||||| |||    
T  21584732 tcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacga 21584831  T
Q  216 agtactttgcgatgtctctttgcacctccctttcctagtcccttacctccctttccgcgacct 278  Q
    || ||||| |  |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21584832 agaactttcctgtgtctctttgcacctccctttcctagtcccttacctccctttccacgacct 21584894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 24982193 - 24981938
Alignment:
Q  16 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacacc 115  Q
    |||| ||||||||||| || ||||| ||||||||||| || || ||||| || ||||| ||||| |  || |||||||||||||| |||||||| |||||    
T  24982193 catagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacc 24982094  T
Q  116 gcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
     |  |||||||| || ||||| || || |||||||| || || |||||||| || ||||| ||||| || || || ||||| || ||||||||||| |||    
T  24982093 tctggtttcttcatatatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacga 24981994  T
Q  216 agtactttgcgatgtctctttgcacctccctttcctagtcccttacctccctttcc 271  Q
    || ||||| | ||| ||||||||||||||||||||||||||||||||||| |||||    
T  24981993 agaactttcctatgcctctttgcacctccctttcctagtcccttacctccttttcc 24981938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 25085185 - 25084923
Alignment:
Q  16 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacacc 115  Q
    |||| ||||||||||| || || || ||||||||||| || || ||||| || ||||| ||||| |  ||||||||||||||||| |||||||| |||||    
T  25085185 catagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacc 25085086  T
Q  116 gcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
     |  |||||||| || ||||| || || ||||||||||| || ||||||||||| ||||  ||||| || || || ||||| || ||||||||||| |||    
T  25085085 tctggtttcttcatatatcaaaccactgattctcttcacaccacctcttctcgccaatctacgaatggcaggcttggtgataccctggatgttatcacga 25084986  T
Q  216 agtactttgcgatgtctctttgcacctccctttcctagtcccttacctccctttccgcgacct 278  Q
    || || || | ||| |||||||||||||||||||| | |||||||||||||||||| ||||||    
T  25084985 agaacctttctatgcctctttgcacctccctttcccaatcccttacctccctttccacgacct 25084923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 271
Target Start/End: Original strand, 24919929 - 24920176
Alignment:
Q  24 acatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccgcgagttt 123  Q
    |||||||| || || || ||||||||||| || || ||||| || || |||||||| |  || |||||||| ||||| |||||||| ||||| |  ||||    
T  24919929 acatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggttt 24920028  T
Q  124 cttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcgaagtacttt 223  Q
    |||| || ||||| ||||| ||||||||||| || |||||||| || ||||| ||||| || || || ||||| || ||||||||||| ||||| |||||    
T  24920029 cttcatagatcaaaccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaacttt 24920128  T
Q  224 gcgatgtctctttgcacctccctttcctagtcccttacctccctttcc 271  Q
     | ||| |||||||||||||||||||| | ||||||||||||||||||    
T  24920129 cctatgcctctttgcacctccctttcccaatcccttacctccctttcc 24920176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 24923495 - 24923757
Alignment:
Q  16 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacacc 115  Q
    |||| ||||||||||| || || || ||||||||||| || || ||||| || || |||||||| |  || |||||||||||||| |||||||| |||||    
T  24923495 catagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacc 24923594  T
Q  116 gcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
     |  |||||||| || ||||| || || |||||||| || || |||||||| || ||||| ||||| || || || ||||| || ||||||||||| |||    
T  24923595 tctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacga 24923694  T
Q  216 agtactttgcgatgtctctttgcacctccctttcctagtcccttacctccctttccgcgacct 278  Q
    || || || | ||| |||||||||||||||||||| ||||||||||||||||| || ||||||    
T  24923695 agaacctttctatgcctctttgcacctccctttccgagtcccttacctcccttaccacgacct 24923757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 31825592 - 31825854
Alignment:
Q  16 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacacc 115  Q
    |||| ||||||||||| || ||||| ||||||||||| || || ||||| || || || ||||| |  || |||||||||||||| |||||||| |||||    
T  31825592 catagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacc 31825691  T
Q  116 gcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
     | ||||||||| || ||||| || || || |||||||| || ||||||||||| ||||| ||||| || || || ||||| || |||||||| |||||     
T  31825692 tctagtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcgg 31825791  T
Q  216 agtactttgcgatgtctctttgcacctccctttcctagtcccttacctccctttccgcgacct 278  Q
    || ||||| |  || || |||||||||||||||||||| |||||||||||||| || ||||||    
T  31825792 agaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacct 31825854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 24497294 - 24497549
Alignment:
Q  16 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacacc 115  Q
    |||| ||||||||||| || || || ||||||||||| || || ||||| || ||||| ||||| |  |||||||| |||||||| |||||||| |||||    
T  24497294 catagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacc 24497393  T
Q  116 gcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
     |  |||||||| || ||||| || || |||||||| || || |||||||| || ||||| ||||| || || || ||||| || |||||||| || |||    
T  24497394 tctggtttcttcatagatcaatccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacga 24497493  T
Q  216 agtactttgcgatgtctctttgcacctccctttcctagtcccttacctccctttcc 271  Q
    || || || | ||| |||||||||||||||||||| ||||||||||||||||||||    
T  24497494 agaaccttcctatgcctctttgcacctccctttccgagtcccttacctccctttcc 24497549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 22898700 - 22898466
Alignment:
Q  16 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacacc 115  Q
    ||||||| |||||||||||||||||||||||||| || || || ||||| || || ||||||||||| |||||||||||||| |||||||||||||| ||    
T  22898700 cataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgcc 22898601  T
Q  116 gcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
     || || || || |||||||| || || || | ||||||||||||||| |  || |  || ||||||||||| ||||| ||||| |||||||| || |||    
T  22898600 acgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtcacga 22898501  T
Q  216 agtactttgcgatgtctctttgcacctccctttcc 250  Q
    || || || ||||||| |||||| || ||||||||    
T  22898500 agcaccttacgatgtcgctttgctccaccctttcc 22898466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 22950368 - 22950134
Alignment:
Q  16 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacacc 115  Q
    ||||||| |||||||||||||||||||||||||| || || || ||||| || || ||||||||||| |||||||||||||| |||||||||||||| ||    
T  22950368 cataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgcc 22950269  T
Q  116 gcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
     || || || || |||||||| || || || | ||||||||||||||| |  || |  || ||||||||||| ||||| ||||| |||||||| || |||    
T  22950268 acgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtcacga 22950169  T
Q  216 agtactttgcgatgtctctttgcacctccctttcc 250  Q
    || || || ||||||| |||||| || ||||||||    
T  22950168 agcaccttacgatgtcgctttgctccaccctttcc 22950134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 41027719 - 41027476
Alignment:
Q  16 cataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacacc 115  Q
    ||||||||||||||||||||||||| ||||| ||||| || || || || || ||||||||||| |  || ||||||||||| || ||||||||||| ||    
T  41027719 cataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctccaaaaagatcttcaacacgcc 41027620  T
Q  116 gcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttctcgctaatcgccgaatcgctggttttgtgattccttggatgttatcgcga 215  Q
     || || |||||||| ||||| ||||| || | ||||||||||||||| |  || || || |||||||| || || || |||||||| |||||||| |||    
T  41027619 acgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggcttcgtaattccttgaatgttatcacga 41027520  T
Q  216 agtactttgcgatgtctctttgcacctccctttcctagtccctt 259  Q
    || || || || ||||  ||||| ||||||||||| | ||||||    
T  41027519 agcaccttacggtgtcgttttgctcctccctttcccaatccctt 41027476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 41706033 - 41705991
Alignment:
Q  265 cctttccgcgacctcttccttttcctgcttctcttcactgtgt 307  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  41706033 cctttctgtgacctcttccttttcctgcttctcttcactgtgt 41705991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 30287957 - 30287999
Alignment:
Q  265 cctttccgcgacctcttccttttcctgcttctcttcactgtgt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30287957 cctttccgcgacctcttccttttcctgcttctcttcactgtgt 30287999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 26358744 - 26358838
Alignment:
Q  177 cgaatcgctggttttgtgattccttggatgttatcgcgaagtactttgcgatgtctctttgcacctccctttcctagtcccttacctccctttcc 271  Q
    |||||||| ||||| || ||||| || |||||||| ||||| ||||||||||| | ||||||||| ||||||||||  ||||| ||||| |||||    
T  26358744 cgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcgatgacgctttgcaccaccctttcctaaaccctttcctccttttcc 26358838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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