View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_61 (Length: 305)

Name: NF10271_low_61
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_61
NF10271_low_61
[»] chr1 (1 HSPs)
chr1 (1-290)||(46795460-46795746)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 46795746 - 46795460
Alignment:
Q  1 cattgacaatcctgaaaataatgattttccaaataacaatactactcttcttgatgattcactactttctattcctttcactacatcaacacatcatgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  46795746 cattgacaatcctgaaaataatgattttccaaataacaatactactcttcttgatgattcactactttctattcctttcac---atcaacacatcatgat 46795650  T
Q  101 gttgttccattccctgatgctaattttgcagattgtaacaacactgcaatgtttgaacaagataatggctacaactttggtgttactagtagttttccaa 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46795649 gttgttccattccctgatactaattttgcagattgtaacaacactgcaatgtttgaacaagataatggctacaactttggtgttactagtagttttccaa 46795550  T
Q  201 ttccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagataggcacagtaagattcacacatcacagg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46795549 ttccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagataggcacagtaagattcacacatcacagg 46795460  T

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