View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_low_63 (Length: 302)
Name: NF10271_low_63
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_63 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 7709225 - 7709482
Alignment:
| Q |
18 |
tcacaagttgtaaagacaatattagtccaaattgaatgaaccagtgttaatcattaatttatgtgaatcttcataatctatactatcttctatatattgc |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7709225 |
tcacaagttgtaaagacaagattagtccaaattgaatgaacctgtgttaatcattaatttatgtgaatcttcataatctatactatcttctatatattgc |
7709324 |
T |
|
| Q |
118 |
ttcatttattcacacattcttcacacacattaaattttcattaacgtaata---ttgttttgctttaagtcatcatcaacaagaggaagatctattatag |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
7709325 |
ttcatttattcacacattcttcaaacacattaaattttcattaacgtaatactattatttttctttaagtcatcat-aacaagaggaagatctaatatag |
7709423 |
T |
|
| Q |
215 |
ttttacattgttcacacacattaatgtttcattaacgtcataatatagtttcacattggtgttc |
278 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7709424 |
ttttgcattgttcacacacattaatgtttcattaacgtcataat-----ttcacattggtgttc |
7709482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University