View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_66 (Length: 298)
Name: NF10271_low_66
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 32810588 - 32810312
Alignment:
| Q |
1 |
cttgttctacataattactctgtgatgggtgccatacatctttgcactgttaaataccattgagattagggggcagaaacttatgactctgtttgttaag |
100 |
Q |
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| T |
32810588 |
cttgttctacataattactctgtgatggatgccatacatctttgcactgttaaataccattgagattagggggcagaaacttatgactctgtt----aag |
32810493 |
T |
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| Q |
101 |
ggaatatatgttttatgtgttgctgaatttaacgttctgtatgtactctatgatttgcttgcattttgagttagtaaaacgtacaattcctactctttct |
200 |
Q |
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| T |
32810492 |
ggaatctatgttttatgtgttgctgaatttaacgttctgtatgtactctatgatttgcttgcattttgagttagtaaaacgtacaattcctactctttct |
32810393 |
T |
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| Q |
201 |
tggtaaaataaattctcattcatcaaaattatcttgctcggctgctaattgaagttccttttaagtgatgcagattgatgt |
281 |
Q |
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| T |
32810392 |
tggtaaaataaattctcattcatcaaaattatcttgctcggctgctaattgaagttccttttaagtgatgcagattgatgt |
32810312 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 16699952 - 16699877
Alignment:
| Q |
112 |
tttatgtgttgctgaatttaacgttctgtatgtactctatgatttgcttgcattttgagttagtaaaacgtacaattcct |
191 |
Q |
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|||||||||| |||||||||| |||||||| | |||||| || |||||||||| ||||||||||| |||||||||| |
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| T |
16699952 |
tttatgtgtttctgaatttaatattctgtat----tgtatgatgtgattgcattttgtgttagtaaaacttacaattcct |
16699877 |
T |
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