View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_68 (Length: 291)
Name: NF10271_low_68
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 46009628 - 46009360
Alignment:
| Q |
4 |
gcaagatcaggaccaagcacatgatcatatacaagttcatcaatagagtactctttctcatcaaaccattcacgcagtgtattctcacagtgtgactctg |
103 |
Q |
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| T |
46009628 |
gcaagatcaggaccaagcacatgatcatatacaagttcatcaacagagtactctttctcatccaaccattcacgcagtgttttctcacagtgtgactctg |
46009529 |
T |
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| Q |
104 |
ctattcgcacacccgcgtcgttgcacttgataaacggtcttcctgattctgatattctaaccctacctgaaacatgtgagtatgaatcaagtagtggaaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46009528 |
ctattcgcacacccgcgtcgttgcacttgataaacggtcttcctgattctgatattctaaccctacctgaaacatgtgagtatgaatcaagtagttgaaa |
46009429 |
T |
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| Q |
204 |
cattggtgcttttaagtcaggtattgagaggttttgaaccgctttagaattgaacaagtatatggatcg |
272 |
Q |
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| T |
46009428 |
cattggtgcttttaagtcagatattgagaggttttgaaccgctttagaattgaacaagtatatggatcg |
46009360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 15922266 - 15922049
Alignment:
| Q |
1 |
aaagcaagatcaggaccaagcacatgatcatatacaagttcatcaatagagtactctttctcatcaaaccattcacgcagtgtattctcacagtgtgact |
100 |
Q |
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| T |
15922266 |
aaagcaagatcaggaccaagcacatgatcatgaacaagttcatcaactgaatactcattttcatccaaccattccctcagcgttttatcacactgcgact |
15922167 |
T |
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| Q |
101 |
ctgctattcgcacacccgcgtcgttgcacttgataaacggtcttcctgattctgatattctaaccctacctgaaacatgtgagtatgaatcaagtagtgg |
200 |
Q |
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| T |
15922166 |
ccgcgattcgcacaccggcatcattgcatttgataaacggtctgccggatttggctattctaactcgaccggcaacatgcgagtacaaatccagcagtgg |
15922067 |
T |
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| Q |
201 |
aaacattggtgcttttaa |
218 |
Q |
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|||||| |||| |||||| |
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| T |
15922066 |
aaacatcggtgtttttaa |
15922049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13114564 - 13114326
Alignment:
| Q |
1 |
aaagcaagatcaggaccaagcacatgatcatatacaagttcatcaatagagtactctttctcatcaaaccattcacgcagtgtattctcacagtgtgact |
100 |
Q |
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||||||||||||||||||||||||||||| |||| | | |||| | ||| ||||| ||||||||||||||| |||| || || ||||| ||| || |
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| T |
13114564 |
aaagcaagatcaggaccaagcacatgatctgggacaaatccttcaacactgtattctttttcatcaaaccattcatgcagcgttttatcacaccgtgtct |
13114465 |
T |
|
| Q |
101 |
ctgctattcgcacacccgcgtcgttgcacttgataaacggtcttcctgattctgatattctaaccctacctgaaacatgtgagtatgaatcaagtagtgg |
200 |
Q |
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| || | || || || || |||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||| | || || ||||||| |
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| T |
13114464 |
cagccacgcgtactcctgcatcgttgcacttgataaacggtcttccagattcgagtattctaatccgacctgaaacatgtgagcaagactcgagtagtgc |
13114365 |
T |
|
| Q |
201 |
aaacattggtgcttttaagtcaggtattgagaggttttg |
239 |
Q |
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| | ||||||| ||||||||| | || |||||||||||| |
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| T |
13114364 |
ataaattggtgtttttaagtcggataatgagaggttttg |
13114326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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