View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_7 (Length: 547)
Name: NF10271_low_7
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 10 - 530
Target Start/End: Complemental strand, 5415686 - 5415166
Alignment:
| Q |
10 |
gagagatgaacaagacaataaaagagaacataaaaattcaggaaacttgaagaaattttaaatctgttggagaggaagaaggcttcgttggggattttga |
109 |
Q |
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| T |
5415686 |
gagaaatgaacaagacaataaaagagaacataaaaattcaggaaacttgaagaaattttaaatctgttggagaggaagaaggctttgttggggattttga |
5415587 |
T |
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| Q |
110 |
catgtgaattatctttcgggtcaatacgaattggatcaaggtcaagaggagttgcggcgacagtgaggaaacagttcaagagaaagtaaggtgtggatag |
209 |
Q |
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| T |
5415586 |
catgtgaattatctttcgggtcaatacgaattggatcaaggtcaagaggagttgcggcgacagtgaggaaacagttcaagagaaagtaaggtgtggatag |
5415487 |
T |
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| Q |
210 |
caaagcagaaaaagaacgcgttcttcgtattgttatataaaagggaagatagggttttgatccatcttccacccattcgatgacagggaactccctttct |
309 |
Q |
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| T |
5415486 |
caaagcagaaaaagaacgcgttcttggtattgttatataaaagggaagatagggttttgatccatcttccacccattcgctgacagggaactccctttct |
5415387 |
T |
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| Q |
310 |
ttcttgtaatatttttcctgcttcttgtaannnnnnncatgttgttcctcttgtaatttcttcttcgcctttctcaatccattttgttatctgtgttgtt |
409 |
Q |
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| T |
5415386 |
ttcttgtaatatttttcctgcttcttgtaatttttttcatgttgttcctcttgtaatttcttcttcgcctttctcaatccattttgttatctgtgttgtt |
5415287 |
T |
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| Q |
410 |
ttctatgttgtttcctgtgttgggagaatggttaactagtgtttgggttatggttttcatgtttaaagacgtttgtgattgttgattttgatggagaaag |
509 |
Q |
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| T |
5415286 |
ttctatgttgtttcctgtgttgggagaatggttaactagtgtttgggttatggttttcatgtttaaagacgtttgtgattgttgattttgatggagaaat |
5415187 |
T |
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| Q |
510 |
aggattttcaaggttgaatgt |
530 |
Q |
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| T |
5415186 |
aggattttcaaggttgaatgt |
5415166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 59 - 225
Target Start/End: Complemental strand, 18969643 - 18969477
Alignment:
| Q |
59 |
aagaaattttaaatctgttggagaggaagaaggcttcgttggggattttgacatgtgaattatctttcgggtcaatacgaattggatcaaggtcaagagg |
158 |
Q |
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| T |
18969643 |
aagaagttttaaacctggtggagaggaagaacgctttgatggggattttgacatgtggatcatcttccggttcaatatgaattggatccgggtcaagagg |
18969544 |
T |
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| Q |
159 |
agttgcggcgacagtgaggaaacagttcaagagaaagtaaggtgtggatagcaaagcagaaaaagaa |
225 |
Q |
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| T |
18969543 |
aattgcggcgacggtgagaaaacggttgaagagaaagtggggtgtgaatagtaaaggagaagaagaa |
18969477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 18969434 - 18969385
Alignment:
| Q |
239 |
ttgttatataaaagggaagatagggttttgatccatcttccacccattcg |
288 |
Q |
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| T |
18969434 |
ttgttatataaaagggatgatagggttttgatccatcttccacccattcg |
18969385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 18969355 - 18969302
Alignment:
| Q |
350 |
gttgttcctcttgtaatttcttcttcgcctttctcaatccattttgttatctgt |
403 |
Q |
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| T |
18969355 |
gttgttgctcttgtattgtcttcttcgcctttctcaacccattttgttttctgt |
18969302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 18969674 - 18969642
Alignment:
| Q |
10 |
gagagatgaacaagacaataaaagagaacataa |
42 |
Q |
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| T |
18969674 |
gagaaatgaacaagacaataaaagagaacataa |
18969642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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