View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_70 (Length: 287)
Name: NF10271_low_70
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 36227267 - 36226996
Alignment:
| Q |
1 |
cactcaagtgactctttagtacttattagattgttgttgt--gggagttgatgtttgttct--tgcaagctgaacaattgtttaattcaagttagttgcn |
96 |
Q |
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| T |
36227267 |
cactcaggtgactctttagtacttattagattgttgttgtatgggagttgatgtttgttctcttgcaagctgaacaattgtttaattcaagttagttgca |
36227168 |
T |
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| Q |
97 |
nnnnnnnnnnnnnnnnngtagttaaaaccagttagttgtttgttagctattttgatcgagttggttggttttgattgattacttgtattgcaagtaaggc |
196 |
Q |
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| T |
36227167 |
aaaaaaaaaaa------gtagttaaaaacagttagttgtttgttagctattttgatcgagttggttggttttgattgattacttgtattgcaagtaagcc |
36227074 |
T |
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| Q |
197 |
acataagttgttt------gcttgtaatcttagattttcattac----taacgagaacatagtttacaatcacattga |
264 |
Q |
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| T |
36227073 |
acataagttgtttatataagcttgtaatcttagattttcattactaaataatgagaacatagtttacaatcacattga |
36226996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 114 - 264
Target Start/End: Complemental strand, 36223107 - 36222951
Alignment:
| Q |
114 |
gtagttaaaaccagttagttgtttgttagctattttgatcgagttggttggttttgattgattacttgtattgcaagtaaggcacataagttgtt----- |
208 |
Q |
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| T |
36223107 |
gtagttaaaaacagttagtttttggttagctattttgatggagttagttagttt-gattgattacttgtattgcaagtaagccatataagtagttgtata |
36223009 |
T |
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| Q |
209 |
--tgcttgtaatcttagattttcattactaacgagaacatagtttacaatcacattga |
264 |
Q |
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| T |
36223008 |
taagcttgtaatctcagattttcattactaatgagaacatagtttacaatcacattga |
36222951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 36223317 - 36223238
Alignment:
| Q |
2 |
actcaagtgactctttagtacttattagattgttgttgtgggagttgatgtttgt--tcttgcaagctgaacaattgttt |
79 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
36223317 |
actcaggtgactctttaatacttattagattgttgttgtgggaattgatgtttgttctcttgcaagctgaataattgttt |
36223238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 28067296 - 28067375
Alignment:
| Q |
114 |
gtagttaaaaccagttagttgtttgttagctattttgatcgagttggttggttttgattgattacttgtattgcaagtaag |
194 |
Q |
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| T |
28067296 |
gtagttaaaac-agttattagtttgttagctattttgatggagttagttagttttgaataattacttgtattggaagtaag |
28067375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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