View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_71 (Length: 286)
Name: NF10271_low_71
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 2257066 - 2256813
Alignment:
| Q |
20 |
tcgtggaagtatttagcctattttgtttgataaactcgcaataatactgtctctctgaaaccctagattgttaatatgtgcatgtgactttaatttcatg |
119 |
Q |
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| T |
2257066 |
tcgtggaggtatttagcctattttgtttgataaactcgcaataatactgtctctctgaaaccctagattgttaatatgtgcatgtgactttaatttcatg |
2256967 |
T |
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| Q |
120 |
aattacatgttgcaatcatactaatatagtcaatttaatttggcatgcagctgtggtacatccatttgcagaacacatagcttactttttgctattcgcc |
219 |
Q |
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| T |
2256966 |
aattacatgttgcaatcatactaatatagtcaatttaatttggcatgcagctgtggtacatccatttgcagaacacatagcttactttttgctattcgcc |
2256867 |
T |
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| Q |
220 |
attccattatacacaacagcaattacaaacacagcatccatagcatcctttgct |
273 |
Q |
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| T |
2256866 |
attccattatacacaacagcaattacaaacacagcatccatagcatcctttgct |
2256813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 258
Target Start/End: Original strand, 2251152 - 2251378
Alignment:
| Q |
28 |
gtatttagcctattttgtttgataaactcgcaataatactgtctctctgaaaccctagattgttaatatgtgcatgtgactttaatttcatgaattacat |
127 |
Q |
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| T |
2251152 |
gtatttggcctattttgtttgataaactcgcaataatactgtctctctgaaaccctagattgttaatatgtgcatgtgactttaatttcatgaattacat |
2251251 |
T |
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| Q |
128 |
gttgcaatcatactaatatagtcaatttaatttggcatgcagctgtggtacatccatttgcagaacacatagcttactttttgctattcgccattccatt |
227 |
Q |
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| T |
2251252 |
gttgcaattatacc----tagtcaatttaatttggcatgcagctgtggtacatccatttgcagaacacatagcttactttttgctattcgccattccatt |
2251347 |
T |
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| Q |
228 |
atacacaacagcaattacaaacacagcatcc |
258 |
Q |
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| T |
2251348 |
atacacaacagcaattacaaacacagcatcc |
2251378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 2257602 - 2257537
Alignment:
| Q |
62 |
aatactgtctctctgaaaccctagattgttaatatgtgcatgtgactttaatttcatgaattacat |
127 |
Q |
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|||||| | |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
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| T |
2257602 |
aatactatgtctctgaaaccctagatttttaatatgtgcatgtaactttaatttgatgaattacat |
2257537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 2250617 - 2250673
Alignment:
| Q |
71 |
tctctgaaaccctagattgttaatatgtgcatgtgactttaatttcatgaattacat |
127 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
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| T |
2250617 |
tctctgaaaccctagatttttaatatgtgcatgtaactttaatttgatgaattacat |
2250673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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