View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_74 (Length: 283)

Name: NF10271_low_74
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_74
NF10271_low_74
[»] chr1 (7 HSPs)
chr1 (133-266)||(12786238-12786373)
chr1 (75-244)||(23632064-23632233)
chr1 (90-176)||(91207-91294)
chr1 (148-225)||(52274435-52274511)
chr1 (138-263)||(9131644-9131769)
chr1 (133-266)||(18513777-18513911)
chr1 (15-51)||(12484073-12484109)
[»] scaffold0088 (1 HSPs)
scaffold0088 (75-244)||(35387-35558)
[»] chr3 (7 HSPs)
chr3 (133-266)||(30993194-30993328)
chr3 (133-242)||(3483654-3483762)
chr3 (133-266)||(3593075-3593208)
chr3 (133-247)||(15777299-15777412)
chr3 (114-262)||(6459999-6460146)
chr3 (193-264)||(18534438-18534509)
chr3 (193-233)||(9733642-9733682)
[»] scaffold0019 (1 HSPs)
scaffold0019 (75-244)||(182968-183139)
[»] chr8 (4 HSPs)
chr8 (75-264)||(6465706-6465891)
chr8 (5-51)||(40391656-40391702)
chr8 (142-266)||(17290626-17290751)
chr8 (7-51)||(9883922-9883966)
[»] chr5 (3 HSPs)
chr5 (142-263)||(39435924-39436045)
chr5 (7-51)||(26658825-26658869)
chr5 (7-51)||(26930414-26930458)
[»] chr7 (5 HSPs)
chr7 (76-156)||(22949182-22949264)
chr7 (193-266)||(18147621-18147696)
chr7 (193-244)||(11508728-11508779)
chr7 (202-265)||(13695857-13695920)
chr7 (193-244)||(32945372-32945423)
[»] chr6 (5 HSPs)
chr6 (114-266)||(9548756-9548908)
chr6 (75-221)||(15285843-15285990)
chr6 (193-266)||(19769047-19769122)
chr6 (197-247)||(19892891-19892941)
chr6 (15-51)||(12980269-12980305)
[»] chr4 (5 HSPs)
chr4 (193-266)||(11153815-11153889)
chr4 (7-51)||(19611671-19611715)
chr4 (133-244)||(19611879-19611990)
chr4 (133-244)||(23974148-23974258)
chr4 (15-51)||(23974422-23974458)
[»] scaffold0281 (1 HSPs)
scaffold0281 (193-266)||(1847-1920)
[»] chr2 (3 HSPs)
chr2 (133-266)||(16093527-16093660)
chr2 (146-240)||(27386908-27387002)
chr2 (75-156)||(32872761-32872845)
[»] scaffold0323 (2 HSPs)
scaffold0323 (213-266)||(16248-16302)
scaffold0323 (7-51)||(16545-16589)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 12786373 - 12786238
Alignment:
Q  133 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 232  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  12786373 aaaggaaaactagggttgtggagagaaaaggcaaggtggcatagaaagaagaacctgaagagagatttcaccgtaggaattcatcaaattctccaaacta 12786274  T
Q  233 gaggtaa--gggggagtctatcttcaccataagggt 266  Q
    |||||||  |||||||||| | |||| |||||||||    
T  12786273 gaggtaatggggggagtctctattcatcataagggt 12786238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 244
Target Start/End: Original strand, 23632064 - 23632233
Alignment:
Q  75 taaatagatgagaacattagaaaaatagggttaagacaaagagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcat 174  Q
    |||||||| ||||||||||||||| ||||||||  ||||||||||||||||||||| |||| ||||||||||||||| ||||||| | |||||  |||||    
T  23632064 taaatagacgagaacattagaaaactagggttacaacaaagagaaaagattagagaacaaaagaaaactagggttgttgagagaagaggcaagaaggcat 23632163  T
Q  175 agaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaaggggg 244  Q
    |  ||||  ||| |  | ||||||||||||||||||| |||||||||||   ||||||||||||||||||    
T  23632164 actaagagaaacgtagagagagatttcaccgtaggaactcatcaaattcgaaaaactagaggtaaggggg 23632233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 91294 - 91207
Alignment:
Q  90 attagaaaaatagggttaagacaa--agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcatag 176  Q
    ||||||||||||||||||  ||||  | |||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||    
T  91294 attagaaaaatagggttacaacaagcaaagaaaagattagagatcaaaggaaaactagggttgtggagag-aagagcaaggaggcatag 91207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 52274511 - 52274435
Alignment:
Q  148 ttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctc 225  Q
    |||||||||||||||||||| |||||||||||||| || ||| | |||||||||||||||  ||||||||||||||||    
T  52274511 ttgtggagagaaaaagcaagatggcatagaaagaagaa-cttgagagagatttcaccgtaaaaattcatcaaattctc 52274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 9131644 - 9131769
Alignment:
Q  138 aaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggt 237  Q
    |||||||||||| ||||||||| ||| || | || |||| ||||| || || || ||||||||    ||||||| ||||||| ||| | ||||| |||||    
T  9131644 aaaactagggttatggagagaagaagtaaagaggaatagcaagaagaatctaaagagagattttgttgtaggaaatcatcaatttcgcaaaactcgaggt 9131743  T
Q  238 aagggggagtctatcttcaccataag 263  Q
    |||| ||||||| | |||||||||||    
T  9131744 aaggaggagtctctattcaccataag 9131769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 18513777 - 18513911
Alignment:
Q  133 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 232  Q
    |||| |||||||||||| ||||||||| | || | | || ||||  |||| |||||  | |||||||| | | |||||| ||||||| ||| | ||||||    
T  18513777 aaagaaaaactagggttatggagagaagaggccaagaggaatagtgagaagaacctagagagagattttaacataggaaatcatcaatttcgcaaaacta 18513876  T
Q  233 gaggtaaggggg-agtctatcttcaccataagggt 266  Q
     ||||||||||| ||||| | ||||||||||||||    
T  18513877 aaggtaagggggaagtctctattcaccataagggt 18513911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 12484073 - 12484109
Alignment:
Q  15 tgtagttacaaaaagaatagtaacaaattcgagaggt 51  Q
    ||||||||||||||||||||||||||| || ||||||    
T  12484073 tgtagttacaaaaagaatagtaacaaaatctagaggt 12484109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 244
Target Start/End: Original strand, 35387 - 35558
Alignment:
Q  75 taaatagatgagaacattagaaaaatagggttaagacaaagagaaaa--gattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggc 172  Q
    ||||||||||||||||||||||||||||| |||  ||||| ||||||  ||||||||| |||| ||||||||||||||||||||||||| |||||  |||    
T  35387 taaatagatgagaacattagaaaaataggattacaacaaacagaaaaaagattagagaacaaaagaaaactagggttgtggagagaaaaggcaagaaggc 35486  T
Q  173 atagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaaggggg 244  Q
    |||| ||||  ||| |  | ||||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  35487 atagcaagaggaacgtagagagagatttcaccgtaggaactcatcaaattcgacaaactagaggtaaggggg 35558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 30993194 - 30993328
Alignment:
Q  133 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 232  Q
    |||||||||||||||||||||||||||||| |||| || ||||||||||| |||||  | ||||| ||||| ||| ||||||||||||||||||||||||    
T  30993194 aaaggaaaactagggttgtggagagaaaaaacaagatgacatagaaagaagaacctggagagagacttcactgtatgaattcatcaaattctccaaacta 30993293  T
Q  233 gaggtaa-gggggagtctatcttcaccataagggt 266  Q
    ||||||| |||||||||| | ||||||||||||||    
T  30993294 gaggtaaggggggagtctctattcaccataagggt 30993328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 3483762 - 3483654
Alignment:
Q  133 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 232  Q
    |||| |||||||||| |||| |||||||||||||| |||||||||||||| || ||| | |||||| | | | ||| |||||||||||||||||||||||    
T  3483762 aaagaaaaactagggctgtgaagagaaaaagcaagatggcatagaaagaagaa-cttgagagagatattatcatagaaattcatcaaattctccaaacta 3483664  T
Q  233 gaggtaaggg 242  Q
    ||||||||||    
T  3483663 gaggtaaggg 3483654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 3593208 - 3593075
Alignment:
Q  133 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 232  Q
    |||| ||||||| |||||||||||||| | |||||| || ||||  ||||||||||    ||||||||| ||||||||| ||||| |||||  |||||||    
T  3593208 aaagaaaaactaaggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttctccgtaggaaatcatc-aattcggcaaacta 3593110  T
Q  233 gaggtaagggg-gagtctatcttcaccataagggt 266  Q
    ||||||||||| |||||| | |||| |||||||||    
T  3593109 gaggtaaggggagagtctctattcatcataagggt 3593075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 15777299 - 15777412
Alignment:
Q  133 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 232  Q
    |||| |||||||||||| ||||||||| | |||| | || ||||  |||| |||||  | ||||||||||||||||||||| ||| | || | |||||||    
T  15777299 aaagaaaaactagggttatggagagaataggcaaagaggaatagcgagaagaacctagagagagatttcaccgtaggaatttatc-acttttgcaaacta 15777397  T
Q  233 gaggtaagggggagt 247  Q
    |||||||||||||||    
T  15777398 gaggtaagggggagt 15777412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 262
Target Start/End: Complemental strand, 6460146 - 6459999
Alignment:
Q  114 agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaatt 213  Q
    |||| ||| ||||| ||||||||||||| ||||||||||||||||| | |||||| ||||||   ||||  | ||  | |||||||||| ||||||| ||    
T  6460146 agagcaaatattagggatcaaaggaaaa-tagggttgtggagagaagaggcaaggaggcataacgagaaggatctagagagagatttcatcgtaggattt 6460048  T
Q  214 catcaaattctccaaactagaggtaagggggagtctatcttcaccataa 262  Q
    |||||||||||   || ||||||||| |  |||||| | ||||||||||    
T  6460047 catcaaattctgttaattagaggtaatgatgagtctctattcaccataa 6459999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 18534438 - 18534509
Alignment:
Q  193 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagg 264  Q
    |||||||  ||| |||||| ||||||| ||| | ||||||||||||||||||||||| | ||||||||||||    
T  18534438 agagattcaaccataggaaatcatcaatttcgcaaaactagaggtaagggggagtctctattcaccataagg 18534509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 9733642 - 9733682
Alignment:
Q  193 agagatttcaccgtaggaattcatcaaattctccaaactag 233  Q
    ||||||||||| |||||||||||||||||||| | ||||||    
T  9733642 agagatttcacagtaggaattcatcaaattcttcgaactag 9733682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 244
Target Start/End: Complemental strand, 183139 - 182968
Alignment:
Q  75 taaatagatgagaacattagaaaaatagggttaagacaa--agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggc 172  Q
    |||||||||||||||||||||||||||||||||   | |  |||||||| |||||||| |||| | ||||||||||||||||||||| | |||||| |||    
T  183139 taaatagatgagaacattagaaaaatagggttacaccgatcagagaaaatattagagaacaaaaggaaactagggttgtggagagaagaggcaaggaggc 183040  T
Q  173 atagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaaggggg 244  Q
    ||||  |||  ||| |  | |||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  183039 atagggagaggaacgtagatagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggggg 182968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 264
Target Start/End: Complemental strand, 6465891 - 6465706
Alignment:
Q  75 taaatagatgagaacattagaaaaatagggttaagacaaagagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcat 174  Q
    |||||||| ||||||||||||||| ||| ||||  ||||| ||||||  ||| |  |||||| |||||||||||||||||||||||||||||| || ||     
T  6465891 taaatagacgagaacattagaaaattagagttacaacaaacagaaaa--ttata--tcaaagaaaaactagggttgtggagagaaaaagcaagatgacac 6465796  T
Q  175 agaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagtctatcttcaccataagg 264  Q
    | |||||| |||||  | |||||||| ||  ||| ||||||||||||||||| ||||||||||||  |||||||| | ||||||||||||    
T  6465795 acaaagaagaacctggagagagattttactatagaaattcatcaaattctccgaactagaggtaaaagggagtctctattcaccataagg 6465706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 40391702 - 40391656
Alignment:
Q  5 aacaagacattgtagttacaaaaagaatagtaacaaattcgagaggt 51  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||    
T  40391702 aacaagacggtgtagttacaaaaataatagtaacaaattcgagaggt 40391656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 17290751 - 17290626
Alignment:
Q  142 ctagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaag- 240  Q
    |||||||||||||||||| |  ||||| || |||   |||| |||||  | |||||||| |||||| ||| | ||||| ||||| ||| ||||||||||     
T  17290751 ctagggttgtggagagaagagacaaggaggaataacgagaagaacctagagagagattttaccgtatgaaattatcaatttctcaaaattagaggtaagg 17290652  T
Q  241 ggggagtctatcttcaccataagggt 266  Q
    ||||||||| | ||||||||||||||    
T  17290651 ggggagtctctattcaccataagggt 17290626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 9883966 - 9883922
Alignment:
Q  7 caagacattgtagttacaaaaagaatagtaacaaattcgagaggt 51  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||    
T  9883966 caagacagtgtagttactgaaagaatagtaacaaattcgagaggt 9883922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 142 - 263
Target Start/End: Original strand, 39435924 - 39436045
Alignment:
Q  142 ctagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaagg 241  Q
    ||||| || ||||||||| | |||||  ||||||| ||||| || || || ||||||||||||||||||| ||||||| ||| | |||||||||||||||    
T  39435924 ctaggattttggagagaagatgcaagaaggcatagtaagaagaatctaaagagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaagg 39436023  T
Q  242 gggagtctatcttcaccataag 263  Q
    |||||||| | |||||||||||    
T  39436024 gggagtctctattcaccataag 39436045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 26658869 - 26658825
Alignment:
Q  7 caagacattgtagttacaaaaagaatagtaacaaattcgagaggt 51  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||||    
T  26658869 caagacagtgtagttacataaataatagtaacaaattcgagaggt 26658825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 26930458 - 26930414
Alignment:
Q  7 caagacattgtagttacaaaaagaatagtaacaaattcgagaggt 51  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||||    
T  26930458 caagacagtgtagttacataaataatagtaacaaattcgagaggt 26930414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 22949264 - 22949182
Alignment:
Q  76 aaatagatgagaacattagaaaaatagggttaagacaaa--gagaaaagattagagatcaaaggaaaactagggttgtggaga 156  Q
    ||||||||||||||||||| |||||| |||||  |||||  |||||||||||||||||||||| |||||||||||||||||||    
T  22949264 aaatagatgagaacattaggaaaataaggttacaacaaatggagaaaagattagagatcaaagaaaaactagggttgtggaga 22949182  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 18147621 - 18147696
Alignment:
Q  193 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaa--gggggagtctatcttcaccataagggt 266  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||  |||||||||| | |||| |||||||||    
T  18147621 agagatttcgccgtaggaattcatcaaattctccgaactagaggtaatggggggagtctctattcatcataagggt 18147696  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 11508728 - 11508779
Alignment:
Q  193 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaaggggg 244  Q
    |||||||| || |||| ||||||||||||||||| |||||||||||||||||    
T  11508728 agagattttacagtagtaattcatcaaattctccgaactagaggtaaggggg 11508779  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 13695920 - 13695857
Alignment:
Q  202 accgtaggaattcatcaaattctccaaactagaggtaagggg-gagtctatcttcaccataaggg 265  Q
    ||||||| |||||||||| |||  |||||||||||||||||| |||||||||||||||| |||||    
T  13695920 accgtagaaattcatcaa-ttcggcaaactagaggtaaggggagagtctatcttcaccacaaggg 13695857  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 32945423 - 32945372
Alignment:
Q  193 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaaggggg 244  Q
    |||||||||| |||||||| ||||||| ||| | ||||||||||||||||||    
T  32945423 agagatttcaacgtaggaaatcatcaatttcgcaaaactagaggtaaggggg 32945372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 266
Target Start/End: Complemental strand, 9548908 - 9548756
Alignment:
Q  114 agagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaatt 213  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||| |  ||||| |||||||  |||| ||| |  | ||||||||||||||||||| |    
T  9548908 agagaaaatattaaggatcaaaggaaaactagggttgtggagagaagagacaaggaggcatagcgagaaaaacgt--agagagatttcaccgtaggaaat 9548811  T
Q  214 catcaaattctc-caaactagaggtaa-gggggagtctatcttcaccataagggt 266  Q
    |||||| ||| |  ||||||||| ||| |||||||||| | |||| |||||||||    
T  9548810 catcaatttcgcaaaaactagagataaggggggagtctctgttcatcataagggt 9548756  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 15285843 - 15285990
Alignment:
Q  75 taaatagatgagaacattagaaaaatagggttaagacaaa-gagaaaagattagagatcaaaggaaaactagggttgtggagagaaaaagcaaggtggca 173  Q
    |||||||||||||||||||| ||||||||||||  |||||  |||||| |||||||||||||| ||| ||||  |||||||||||| | |||| |  |||    
T  15285843 taaatagatgagaacattaggaaaatagggttacaacaaacaagaaaatattagagatcaaagaaaatctagtattgtggagagaagacgcaaagaagca 15285942  T
Q  174 tagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaat 221  Q
    |||  |||| || ||  | ||||||||||||||| ||||||| |||||    
T  15285943 tagtgagaagaatctggagagagatttcaccgtaagaattcaccaaat 15285990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 19769047 - 19769122
Alignment:
Q  193 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaa--gggggagtctatcttcaccataagggt 266  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||  |||||||||| | |||| |||||||||    
T  19769047 agagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatggggggagtctctattcatcataagggt 19769122  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 19892941 - 19892891
Alignment:
Q  197 atttcaccgtaggaattcatcaaattctccaaactagaggtaagggggagt 247  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  19892941 atttcatcgtagaaattcatcaaattctccgaactagaggtaagggggagt 19892891  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 12980269 - 12980305
Alignment:
Q  15 tgtagttacaaaaagaatagtaacaaattcgagaggt 51  Q
    |||||||||  ||||||||||||||||||||||||||    
T  12980269 tgtagttactgaaagaatagtaacaaattcgagaggt 12980305  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 11153889 - 11153815
Alignment:
Q  193 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaa-gggggagtctatcttcaccataagggt 266  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||| |||||||||| | |||| |||||||||    
T  11153889 agagatttcaccgtatgaattcatcaaattcttcgaactagaggtaatgggggagtctctattcatcataagggt 11153815  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 19611671 - 19611715
Alignment:
Q  7 caagacattgtagttacaaaaagaatagtaacaaattcgagaggt 51  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||    
T  19611671 caagacagtgtagttactgaaagaatagtaacaaattcgagaggt 19611715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 244
Target Start/End: Original strand, 19611879 - 19611990
Alignment:
Q  133 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 232  Q
    |||| |||||||||||||||| ||||| | |||||| || ||||  |||| |||||  | |||||||||| |||||| | ||||||| ||| | ||| ||    
T  19611879 aaagaaaaactagggttgtggggagaagaggcaaggagggatagcgagaagaacctagagagagatttcatcgtagggaatcatcaatttcgcaaaatta 19611978  T
Q  233 gaggtaaggggg 244  Q
    |||||| |||||    
T  19611979 gaggtatggggg 19611990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 23974258 - 23974148
Alignment:
Q  133 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 232  Q
    |||| |||||||||||| ||||||||| |  ||| | || ||||  |||| |||||  | | ||||||||||||||||| ||||| |||||| |||||||    
T  23974258 aaagaaaaactagggttatggagagaagagacaaagaggaatagcgagaagaacctagagaaagatttcaccgtaggaaatcatc-aattctgcaaacta 23974160  T
Q  233 gaggtaaggggg 244  Q
    ||||||| ||||    
T  23974159 gaggtaatgggg 23974148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 23974458 - 23974422
Alignment:
Q  15 tgtagttacaaaaagaatagtaacaaattcgagaggt 51  Q
    |||||||||  ||||||||||||||||||||||||||    
T  23974458 tgtagttactgaaagaatagtaacaaattcgagaggt 23974422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 1920 - 1847
Alignment:
Q  193 agagatttcaccgtaggaattcatcaaattctccaaactagaggta-agggggagtctatcttcaccataagggt 266  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||||  |||||||||| | || |||||||||||    
T  1920 agagatttcaccgtaggaaatcatc-aattctgcaaactagaggtatggggggagtctctatttaccataagggt 1847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 16093660 - 16093527
Alignment:
Q  133 aaaggaaaactagggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaacta 232  Q
    |||| |||||||||||| ||||||||||| |||| |  | ||||  |||  |||||  | ||||||||||| |||| |||||||||  || | |||||||    
T  16093660 aaagaaaaactagggttatggagagaaaaggcaaagatgaatagcgagaggaacctagagagagatttcactgtagaaattcatcacttt-tgcaaacta 16093562  T
Q  233 gaggtaag-ggggagtctatcttcaccataagggt 266  Q
    |||||||| ||||||||| | ||||||||||||||    
T  16093561 gaggtaagaggggagtctctattcaccataagggt 16093527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 27386908 - 27387002
Alignment:
Q  146 ggttgtggagagaaaaagcaaggtggcatagaaagaataaccttaaaagagatttcaccgtaggaattcatcaaattctccaaactagaggtaag 240  Q
    |||||||||||||| | |||||| ||||| |  |||| |||||  | |||||||||||||||| || |||| || ||| | ||||||||||||||    
T  27386908 ggttgtggagagaagaggcaaggaggcatggcgagaagaacctagagagagatttcaccgtagaaaatcattaatttcgcaaaactagaggtaag 27387002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 32872761 - 32872845
Alignment:
Q  75 taaatagatgagaacattagaaaaatagggtta----agacaaagagaaaagattagagatcaaaggaaaactagggttgtggaga 156  Q
    |||||||||||||| || || |||||| |||||    | ||||||| |||||||||||||||| | ||||| ||||||||||||||    
T  32872761 taaatagatgagaatatcaggaaaataaggttacaacaaacaaaga-aaaagattagagatcacaagaaaaatagggttgtggaga 32872845  T

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Target: scaffold0323 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 16302 - 16248
Alignment:
Q  213 tcatcaaattctccaaactagaggtaaggggg-agtctatcttcaccataagggt 266  Q
    ||||||||||||| |||||||||||||||||| ||||| | ||||||| ||||||    
T  16302 tcatcaaattctctaaactagaggtaagggggaagtctctattcaccaaaagggt 16248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 16589 - 16545
Alignment:
Q  7 caagacattgtagttacaaaaagaatagtaacaaattcgagaggt 51  Q
    ||||||| |||||||||  |||||||||||||||||| |||||||    
T  16589 caagacagtgtagttactgaaagaatagtaacaaatttgagaggt 16545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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