View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_78 (Length: 275)
Name: NF10271_low_78
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 6444036 - 6443786
Alignment:
| Q |
20 |
gtatcgctaacgcattaaacgtttctatttacaggtggagagcgcgcaagttgaaacgtcgacgtgcaattacagtgaagaagaatttcagaggtttttg |
119 |
Q |
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| T |
6444036 |
gtatcgctaacgcattaaacgtttctatttacaggtggagagcgcgcaagttgaaacgtcgacgtgcaattacagtgaagaagaatttcagaggtttttg |
6443937 |
T |
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| Q |
120 |
aaatttgaatttgctttggattctttaagttagttacagtttttgagttaggnnnnnnnnnnnnntaaacatgatgaaataaatgatatgtttctaacag |
219 |
Q |
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| T |
6443936 |
aaatttgaatttgctttggattctttaagttagttacagtttttgagttagg-aaaaaaaaaaaataaacatgatgaaataaatgatatgtttctaacag |
6443838 |
T |
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| Q |
220 |
ccacaattttttccgttcaaaatcttagtaactgatttgattcttctctctc |
271 |
Q |
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| T |
6443837 |
ccacaattttttccgttcaaaatcttagtaactgatttgattcttctctctc |
6443786 |
T |
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