View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_8 (Length: 535)
Name: NF10271_low_8
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Complemental strand, 30466864 - 30466363
Alignment:
| Q |
19 |
atagattctttttaacaattcacaattgtattgattcataatccaatagtgactttccctt-cttctactataactttctaatcctgtttctcttggagc |
117 |
Q |
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| T |
30466864 |
atagattctttttaacaattcacaattgtattgattcataatccaatagtgactttccctttcttctactataactttctaatcctgtttctcttggagc |
30466765 |
T |
|
| Q |
118 |
gctgcctttgtggaataaatctaaaatggtcattatcagctgggtcaccgttccccctcttgcgtttattggatcgattttgatgcagaaactctactcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
30466764 |
gctgcctttgtggaataaatctaaaatggtcattatcagctgggtcaccgttccccctcttgcgtttattagatcgattttgaaacagaaactctactcc |
30466665 |
T |
|
| Q |
218 |
ttcctgcaatgttgctctccttttcttttcatagttccataattcaaatagagggtattcaccactagaatcgttttcatttttctctatcaaagctgcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30466664 |
ttcctgcaatgttgctctccttttcttttcatagttccataattcaaatagagggtattcaccactagaatcgttttcatttttctctatcaaagctgcc |
30466565 |
T |
|
| Q |
318 |
actatatcattatatgctgcttgaccgattcttttcttcagccgattcaactttccatgtgcatcgttaattataacttgctataat--nnnnnnntaaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
30466564 |
actatatcattatatgctgcttgaccgattcttttcttcagccgattcaactttccatgtgtatcgttaattataacttgctataataaaaaaaaataaa |
30466465 |
T |
|
| Q |
416 |
tataaagggtccatcaatcaaatatttcctgtcctatgtaataaaacaagcaacagatgatgatgaaccaaattcgattaaaagtaacaggagttagaac |
515 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30466464 |
aataaagggtccatcgatcaaatatttcctgtcctatgtaataaaacaagcaaca------gatgaaccaaattcgattaaaagtaacaggagttagaac |
30466371 |
T |
|
| Q |
516 |
tatacctt |
523 |
Q |
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|||||||| |
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| T |
30466370 |
tatacctt |
30466363 |
T |
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