View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_80 (Length: 271)
Name: NF10271_low_80
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_80 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 11807742 - 11807498
Alignment:
| Q |
12 |
atgaacatagtttttgttggagactctttatctaggaaccaactagagtcccttatttgcttattatccactgtttcaaaacctaaatatatcaatcata |
111 |
Q |
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| T |
11807742 |
atgaacatagtttttgttggagactctttatctaggaaccaactagagtcccttatttgcttattatccactgtttcaaaacctaaatatatcaatcata |
11807643 |
T |
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| Q |
112 |
taggctctattgggaggtggtattttccttcttacaatgcaaacttgacatcctattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagg |
211 |
Q |
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| T |
11807642 |
taggctctattgggaggtggtattttccttcttacaatgcaaacttgacatcctattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagg |
11807543 |
T |
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| Q |
212 |
gccaaattataatacaatacatttggatcatgtaagtgagaattg |
256 |
Q |
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| T |
11807542 |
gccaaattataatacaatacatttggatcatgtaagtgagaattg |
11807498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 44248824 - 44248590
Alignment:
| Q |
12 |
atgaacatagtttttgttggagactctttatctaggaaccaactagagtcccttatttgcttattatccactgtttcaaaacctaaatatatcaatcata |
111 |
Q |
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| T |
44248824 |
atgaacatagcttttgttggagactctttagcaaataaccaaatagagtcccttatttgcttattatccactgtatcaagccctaaacgtgtccaccata |
44248725 |
T |
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| Q |
112 |
taggctctattgggaggtggtattttccttcttacaatgcaaacttgacatcctattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagg |
211 |
Q |
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| T |
44248724 |
taggctctgatggaaggtggtactttccttcttacaacgcaaacttgacagcctattggtcaccttttcttgtgaagggtgatcaaagaataaaggatgg |
44248625 |
T |
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| Q |
212 |
gccaaattataatacaatacatttggatcatgtaa |
246 |
Q |
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| T |
44248624 |
tccacaatataatacaatatatttagatcaagtaa |
44248590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 51382933 - 51383156
Alignment:
| Q |
18 |
atagtttttgttggagactctttatctaggaaccaactagagtcccttatttgcttattatccactgtttcaaaacctaaatatatcaatcatataggct |
117 |
Q |
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| T |
51382933 |
atagcttttgttggagactctttatctaggaaccaaattgagtcccttatatgcttattatccactgcttcaaaacctaaacgtgtccgccatctaggct |
51383032 |
T |
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| Q |
118 |
ctattgggaggtggtattttccttcttacaatgcaaacttgacatcctattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagggccaaa |
217 |
Q |
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| T |
51383033 |
cta---gaaagtggtactttccttctcacaatgcaaacttgtctttttattggtcgccttttcttgtgaggggtgttcaaagaaaaaacagagggccaat |
51383129 |
T |
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| Q |
218 |
ttataatacaatacatttggatcatgt |
244 |
Q |
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| T |
51383130 |
ttataatacaatgtatttggatcatgt |
51383156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 15283852 - 15283970
Alignment:
| Q |
128 |
gtggtattttccttcttacaatgcaaacttgacatcctattgggcaccatttcttgtgaagggtgatcaaagaagaaaggaagggccaaattataataca |
227 |
Q |
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| T |
15283852 |
gtggtattttccttctcacaatgcaaacttgacattctattggtcaccatttcttgtgaagggtgatcaaagaaaaaatgatgggccacaatataataca |
15283951 |
T |
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| Q |
228 |
atacatttggatcatgtaa |
246 |
Q |
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||| ||||||||||||||| |
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| T |
15283952 |
atatatttggatcatgtaa |
15283970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 15274541 - 15274608
Alignment:
| Q |
12 |
atgaacatagtttttgttggagactctttatctaggaaccaactagagtcccttatttgcttattatc |
79 |
Q |
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| T |
15274541 |
atgaacatagcttttgttggagactctttagctaggaaccaaatagagtcccttgtttgcttattatc |
15274608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 15262258 - 15262333
Alignment:
| Q |
23 |
ttttgttggagactctttatctaggaaccaactagagtcccttatttgcttattatccactgtttcaaaacctaaa |
98 |
Q |
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|||||||||||| |||||| |||| |||||| | ||||| ||| ||||| | ||||| |||||||||||||||||| |
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| T |
15262258 |
ttttgttggagattctttagctagaaaccaatttgagtctcttctttgcatgttatcaactgtttcaaaacctaaa |
15262333 |
T |
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