View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_81 (Length: 270)
Name: NF10271_low_81
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_81 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 34383217 - 34382963
Alignment:
| Q |
16 |
acatgcatagtatattgggatgctaccaacttgttagttcataaatagtacgtttcagtgcacatgggagccaagactaagccattttgtatttaaatta |
115 |
Q |
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| T |
34383217 |
acatgcatagtatattgggatgctaccaaattgttagttcataaatagtacgtttcagtgcacatgggagccaagactaagccattttgtatttaaatta |
34383118 |
T |
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| Q |
116 |
aaaacagacttactttcaattgttctgtctacaatttttcaaattgtcaactttctcacacatttagcatgccactgtaccaaaaatttaatatgattta |
215 |
Q |
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| T |
34383117 |
aaaacagacttactttcaattgttctgtctacaatttttcaaattgtcaactttctcacacatttagcatgccactgtaccaaaaatttaatatgattta |
34383018 |
T |
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| Q |
216 |
cactagatctcctagcatattattaaaaaataatgagtttactgaaacattgttc |
270 |
Q |
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| T |
34383017 |
cactagatctcctagcatattattaaaaaataatgagtttactgaaacattgttc |
34382963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 148 - 270
Target Start/End: Complemental strand, 34368464 - 34368341
Alignment:
| Q |
148 |
aatttttcaaattgtcaactttctcacacatttagcatgccactgtaccaaaaatttaatatgatttacactagatctcctagcatattattaa-aaaat |
246 |
Q |
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| T |
34368464 |
aattttgcaaattgccaaattgctcacacattgagcgtgccactgtaccaaaaaattaatatgatttacactagatgtcctagcatattattaaaaaaat |
34368365 |
T |
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| Q |
247 |
aatgagtttactgaaacattgttc |
270 |
Q |
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| T |
34368364 |
aatgagtttactgaaacactgttc |
34368341 |
T |
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