View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_84 (Length: 264)
Name: NF10271_low_84
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_84 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 57 - 264
Target Start/End: Complemental strand, 38711714 - 38711507
Alignment:
| Q |
57 |
gtctgcgaacgaagtgataaacaccattaaaacacacacatacaataaggttctggatttcaacttaaataaaggcgtccagcctaacaatttcgatatt |
156 |
Q |
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| T |
38711714 |
gtctgcaaacgaagtggtaaacatcattaaaactcacacatacagcaaagttctggatttcaactcaaataaaggcgttcaatctaacaatttcgacatt |
38711615 |
T |
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| Q |
157 |
atcagttgagctaggttttattgattatatcaatcaatacattattttgtctgtacacaaagtagtaaacaccactaaaactcacacatactctaagatt |
256 |
Q |
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| T |
38711614 |
atcagttgagctaggttttattgattatatcaatcaatatattattttgtctgtacacaaagtagtaaacaccactaaaactcacacatactgtaaggtt |
38711515 |
T |
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| Q |
257 |
ttagattc |
264 |
Q |
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| T |
38711514 |
ttagattc |
38711507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 38711549 - 38711433
Alignment:
| Q |
74 |
taaacaccattaaaacacacacatacaataaggttctggatttcaacttaaataaaggcgtccagcctaacaatttcgatattatcagttgagctaggtt |
173 |
Q |
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| T |
38711549 |
taaacaccactaaaactcacacatactgtaaggttttagattcgaacccaagtaaagacgttcaatttaacaatttcgacattatcagttgaactaggct |
38711450 |
T |
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| Q |
174 |
ttattgattatatcaat |
190 |
Q |
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| T |
38711449 |
ttaaagattatatcaat |
38711433 |
T |
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