View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_88 (Length: 259)
Name: NF10271_low_88
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 16908720 - 16908485
Alignment:
| Q |
1 |
atatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatggaaagtgtaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908720 |
atatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgttgtgactcattgtgggtggaacactattatggaaagtgtaaatg |
16908621 |
T |
|
| Q |
101 |
caggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagttggtgcaaa |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
16908620 |
caggtttaccattggctacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggcagttggagcaaa |
16908521 |
T |
|
| Q |
201 |
agaatggagaaattggaatgagtttggggatgatgt |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
16908520 |
agaatggagaaattggaatgagtttggggatgatgt |
16908485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14869939 - 14870174
Alignment:
| Q |
1 |
atatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatggaaagtgtaaatg |
100 |
Q |
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|||||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
14869939 |
atatggggttgggcaccacaactgctgatactagagcatgctgcagttggagcagtggtgactcactgtggctggaacactattatggaaagtgtaaatg |
14870038 |
T |
|
| Q |
101 |
caggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagttggtgcaaa |
200 |
Q |
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||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
14870039 |
caggtttgtcattggcaacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggcagttggagcaaa |
14870138 |
T |
|
| Q |
201 |
agaatggagaaattggaatgagtttggggatgatgt |
236 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |
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| T |
14870139 |
ggaatggagaaactggaatgagtttggggatgatgt |
14870174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 5994964 - 5994740
Alignment:
| Q |
4 |
tggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatggaaagtgtaaatgcag |
103 |
Q |
| |
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||||| ||||||||||||||| ||||||| ||| || |||| |||||| | |||| ||||||||| ||||||||| || | |||||||| |||| | |
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| T |
5994964 |
tggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtgtgaatgttg |
5994865 |
T |
|
| Q |
104 |
gtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagttggtgcaaaaga |
203 |
Q |
| |
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| |||||| | || ||||| |||||||||||||| ||||||||||||| | | | ||||||||||| || |||||||| | || || || ||||| |
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| T |
5994864 |
ggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtgggagctaaaga |
5994765 |
T |
|
| Q |
204 |
atggagaaattggaatgagtttggg |
228 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
5994764 |
atggaggaattggaatgagtttggg |
5994740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 17572461 - 17572351
Alignment:
| Q |
118 |
acttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagttggtgcaaaagaatggagaaattgga |
217 |
Q |
| |
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|||||||| || ||||||||||| ||||| ||||||| ||| | ||||||||||| | ||||| || | ||||| || ||||||||||||||||||| |
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| T |
17572461 |
acttggcctttgtttgctgaacatttttttaatgagaagttggttgttgatgtgttgagaattggggtatctgttggggccaaagaatggagaaattgga |
17572362 |
T |
|
| Q |
218 |
atgagtttggg |
228 |
Q |
| |
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||||||||||| |
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| T |
17572361 |
atgagtttggg |
17572351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 17620329 - 17620367
Alignment:
| Q |
190 |
gttggtgcaaaagaatggagaaattggaatgagtttggg |
228 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||| |
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| T |
17620329 |
gttggggctaaagaatggagaaattggaatgagtttggg |
17620367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 228
Target Start/End: Complemental strand, 14710056 - 14709948
Alignment:
| Q |
120 |
ttggccattatttgctgaacagtttttcaatgaga-gattgttggttgatgtgttcaagattggtgtggcagttggtgcaaaagaatggagaaattggaa |
218 |
Q |
| |
|
|||||| || |||||||| || ||||| ||||||| |||| || |||||||||| | ||||| ||| | ||||| || |||||||||||||||||||| |
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| T |
14710056 |
ttggcctttgtttgctgatcaattttttaatgagaagattatta-ttgatgtgttgagaattggggtgtctgttggggctaaagaatggagaaattggaa |
14709958 |
T |
|
| Q |
219 |
tgagtttggg |
228 |
Q |
| |
|
|||||||||| |
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|
| T |
14709957 |
tgagtttggg |
14709948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 12613769 - 12613877
Alignment:
| Q |
118 |
acttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagttggtgcaaaagaatggagaaattgga |
217 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||| |||| ||||||| ||||| || ||||| ||| || | || | |||||||| |||||||| |
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| T |
12613769 |
acttggcctttatttgctgaacaattttttcatgagaaattggtggttgaagtgttaaaaattggggtgtcactagggattagagaatggaaaaattgga |
12613868 |
T |
|
| Q |
218 |
atgagtttg |
226 |
Q |
| |
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||||||||| |
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|
| T |
12613869 |
atgagtttg |
12613877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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