View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_89 (Length: 258)
Name: NF10271_low_89
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_89 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 38520318 - 38520546
Alignment:
| Q |
20 |
ccaatgaccaatttttcattccaaagataatcagtaaagttaattacatcttaaaacattagttattaccagattattttgaaactcaaaatcatactag |
119 |
Q |
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| T |
38520318 |
ccaatgaccaatttttcattccaaagctaatcagtagagttaattacatcttaaaacattagttattaccagattattttgaaactcaaaatcatactag |
38520417 |
T |
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| Q |
120 |
taagtggcagattttccttcaaaaaatagttgtggaaaaatataccatatttattaatccctctataatttccgcaattttgtttatcttcttttttctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38520418 |
taagtggcagattttccttcaaaaaatagttgtggaaaaatataccatatttattaatccctctataatttccgcaattttgtttatcttcttttttctt |
38520517 |
T |
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| Q |
220 |
ataaatcaagattaaattgttttttcttc |
248 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38520518 |
ataaatcaagattaaattgttttttcttc |
38520546 |
T |
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