View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_low_91 (Length: 255)
Name: NF10271_low_91
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_91 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 47350223 - 47349996
Alignment:
| Q |
20 |
gtcttccattccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47350223 |
gtcttccattccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaact |
47350124 |
T |
|
| Q |
120 |
ggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgtatgcatactcctcaatctcaaattgttccgtcaaaaccttccacaatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47350123 |
ggacccttatccttcatcatctcagccaaccttaaacgaggaccgtcctcgtatccatactcctcaatctcaaattgttccgtcaaaaccttccacaatt |
47350024 |
T |
|
| Q |
220 |
gtttccacctaaaaacatcacctttgct |
247 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
47350023 |
gtttccacctaaaaacatcaccattgct |
47349996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 3818669 - 3818884
Alignment:
| Q |
29 |
tccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaactggaccctta |
128 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||||||||||||| |||||| || | | | |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3818669 |
tccaaaacaagcatctgcaaaccaccactcagcaacttcttccagcttcgttacctgcaacccattctccttcacaatctcatcccaaacaggaccctta |
3818768 |
T |
|
| Q |
129 |
tccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttcc |
225 |
Q |
| |
|
|||||||||| ||| | ||| | |||||||||| ||||||| | |||||||||||||| |||||||||||| | ||||||||||||||| |||| |
|
|
| T |
3818769 |
tccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatcccaaattgttccgcgataaccttccacaattgcttcc |
3818868 |
T |
|
| Q |
226 |
acctaaaaacatcacc |
241 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3818869 |
acctaaaaacatcacc |
3818884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 241
Target Start/End: Complemental strand, 47339208 - 47338993
Alignment:
| Q |
29 |
tccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaactggaccctta |
128 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||||||||||||| |||||| || | | | |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47339208 |
tccaaaacaagcatctgcaaaccaccactcagcaacttcttccagcttcgtcacctgcaacccattctccttcacaatctcatcccaaacaggaccctta |
47339109 |
T |
|
| Q |
129 |
tccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttcc |
225 |
Q |
| |
|
|||||||||| ||| | ||| | |||||||||| ||||||| | |||||||||||||| |||||||||||| | ||||||||||||||| |||| |
|
|
| T |
47339108 |
tccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatcccaaattgttccgcgataaccttccacaattgcttcc |
47339009 |
T |
|
| Q |
226 |
acctaaaaacatcacc |
241 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47339008 |
acctaaaaacatcacc |
47338993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 47347614 - 47347457
Alignment:
| Q |
93 |
ttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatct |
189 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||| | |||||||||| ||||||| | |||||||||||||| |
|
|
| T |
47347614 |
ttctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaacgaggaccttcctcgtcaaacccatactcctcaatcc |
47347515 |
T |
|
| Q |
190 |
caaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcacctttgct |
247 |
Q |
| |
|
|||| ||||||| |||||||||||| | ||||||||| |||||||||||||| ||||| |
|
|
| T |
47347514 |
caaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgct |
47347457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University