View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10271_low_93 (Length: 250)
Name: NF10271_low_93
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_93 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 41879078 - 41878840
Alignment:
| Q |
12 |
acatcaactctagcaacaccatctctttccccaccaaccttagcaacatcaacctcaccaacaatcaactccttagcagcatcctctccatcttcctcgt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41879078 |
acatcaactctagcaacaccatctctttccccaccaaccttagcaacatcaacatcaccaacaatcaactccttagcagcatcctctccatcttcctcgt |
41878979 |
T |
|
| Q |
112 |
ctacataattaggatcattctcatccatagccgccggcgccggatcaagcatattatcaaccatatcagccggaccttcccaagtaaacttaccaccacg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41878978 |
ctacataattaggatcattctcatccatagccgccggcgccggatcaagcatattatcaaccatatcagccggaccttcccaagtaaacttaccaccacg |
41878879 |
T |
|
| Q |
212 |
accagacttcggcggtccgcggccaatgcctatgccgtc |
250 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41878878 |
accagacttcggcggtccacggccaatgcctatgccgtc |
41878840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University