View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_94 (Length: 248)
Name: NF10271_low_94
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_94 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 6813121 - 6812881
Alignment:
| Q |
1 |
ttgtctaaacatctatatattcatttcattcaaattaattaagactatgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctg |
100 |
Q |
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| T |
6813121 |
ttgtctaaacatctatatattcatttcattcaaattaattaatactatgtaggtttggcacttcaaataattggaatgtatccaaagctggtgaatgctg |
6813022 |
T |
|
| Q |
101 |
taaaccatgatggattatcacctctccatattcttgctaggaaacctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacac |
200 |
Q |
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| T |
6813021 |
taaaccatgatggattatcacctctccatattcttgctaggaaacctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacac |
6812922 |
T |
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| Q |
201 |
ttgtaagtaacatcatttttataaaattttctttcttctca |
241 |
Q |
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| T |
6812921 |
ttgtaagtaacatcatttttataaaattttctttcttctca |
6812881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 6819677 - 6819458
Alignment:
| Q |
1 |
ttgtctaaacatctatatattcatttcattcaaattaattaagactatgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6819677 |
ttgtctaaacatctatatattcatttcattcaaattaattaatactatgtaggtttggcaattcaaataattggaatgtatccaaagcttgtgaatgctg |
6819578 |
T |
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| Q |
101 |
taaaccatgatggattatcacctctccatattcttgctaggaaacctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacac |
200 |
Q |
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| T |
6819577 |
taaatcatgatggattatcacctctgcatattcttgctaggaagcctaattgtttcagaagctgcacaacgatggtgctaattgaacgtattatctacac |
6819478 |
T |
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| Q |
201 |
ttgtaagtaacatcattttt |
220 |
Q |
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| T |
6819477 |
ttgtaagtaacatcactttt |
6819458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 6833981 - 6833814
Alignment:
| Q |
48 |
tgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatggattatcacctctccatattcttgctaggaaacct |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
6833981 |
tgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgttgtaaaccatgaaggattatcacctctgcatattcttgctaggaaacct |
6833882 |
T |
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| Q |
148 |
aattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacatca |
215 |
Q |
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| T |
6833881 |
aattgtttcagaagctgcacaaggatggagttgattgatcgtatcatttacacttgtaagtaacatca |
6833814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 34778543 - 34778383
Alignment:
| Q |
44 |
actatgtaggtttggcacttcaaataattggaatgtatccaaagcttgtgaatgctgtaaaccatgatggattatcacctctccatattcttgctaggaa |
143 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
34778543 |
actatgtagatttggcacttcaattaattggaatgtatccaaagcttgtgaatgctgtaaac-------------cacctctgcatattcttgctaggaa |
34778457 |
T |
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| Q |
144 |
acctaattgtttcagaagctgcacaaggatggagctaattgatagtatcatctacacttgtaagtaacatcattttt |
220 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| || |||||| |||||||||||||||| |||| |
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| T |
34778456 |
gcctaattgtttcagaagtggcacaaggctggagctaattgaacgt---atctacccttgtaagtaacatcactttt |
34778383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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