View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_95 (Length: 248)
Name: NF10271_low_95
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_95 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38187823 - 38188065
Alignment:
| Q |
1 |
tggaagaggatcttcacgcatggacctagtcttggggtcataatgtgcagaattgacat------tgagaagatattttgcagtatcctctcggatacgt |
94 |
Q |
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| T |
38187823 |
tggaagaggatcttcacgcatggacctagtcttggggtcataatgtgcagaattgacatcgagattgagaagatattttgcagtatcctctcggatacgt |
38187922 |
T |
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| Q |
95 |
aggttcctgaagattaagatatttcagttacaatccacgtaagaaaaataatagaagtgataattaccaatcaactctgctatgcacttttacaatgaca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38187923 |
aggttcctgaagattaagatatttcagttacaatccacgtaagaaaaataatagaagtgataattaccaatcaactctgctatgcacttttacaatgaca |
38188022 |
T |
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| Q |
195 |
gcatcataaaaattacctcacagttcctctactcccaccacct |
237 |
Q |
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| T |
38188023 |
gcatcataaaaattacctcacagttcctctactcccaccacct |
38188065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 38923074 - 38922818
Alignment:
| Q |
1 |
tggaagaggatcttcacgcatggacctagtcttggggtcataatgtgcagaattgacat------tgagaagatattttgcagtatcctctcggatacgt |
94 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
38923074 |
tggaagaggatcttcacgcatggacctggtcttggggtcataatgtgcagaattgacatcaagattgagaagatattttgcagtatcctctcgaatacgt |
38922975 |
T |
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| Q |
95 |
aggttcctgaagattaagatat--ttcagttacaatccacgtaagaaaaataatagaagtgataatt------------accaatcaactctgctatgca |
180 |
Q |
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|||||||||||| ||||||||| || ||||||| || ||||||||||| |||||| |||||||| |||||| |||| || |||| |
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| T |
38922974 |
aggttcctgaaggttaagatatatttacattacaattcatgtaagaaaaattatagaactgataattgtaatttaacggaccaataaacttggcgctgca |
38922875 |
T |
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| Q |
181 |
cttttacaatgacagcatcataaaaattacctcacagttcctctactcccaccacct |
237 |
Q |
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| ||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
38922874 |
ttattacaatgagagcaacataaaaattacctcacagttcctgtactcccaccacct |
38922818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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