View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10271_low_97 (Length: 244)
Name: NF10271_low_97
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10271_low_97 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0938 (1 HSPs) |
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| [»] scaffold0062 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 10346969 - 10346745
Alignment:
| Q |
20 |
gaaatcaccaagaacatacctagcactcgaattatgcctttgaagaataccaccaagcgcatgccataagtcctaacgacctctattatcacacggagca |
119 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10346969 |
gaaatcaccaagaacacaccaagcactcgaattatgcctttgaagaataccaccaagcgcatgccataagtcctgacgacctctattatcacacggagca |
10346870 |
T |
|
| Q |
120 |
tatacatttgtcaattcaaaatcaacattatttgtaataaacttccctttcacaatcaaagagttagataaaaccatcgacatcactatattgtttactt |
219 |
Q |
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|| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10346869 |
taaacatttgccaatccaaaatcaacattatttgtaataaacttccctttcacaatcaaagagttagataaaaccatcgacatcactatattgtttactt |
10346770 |
T |
|
| Q |
220 |
attttcaaggacaggaactatatac |
244 |
Q |
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||||||||||||||||||||||||| |
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| T |
10346769 |
attttcaaggacaggaactatatac |
10346745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 10333877 - 10333835
Alignment:
| Q |
199 |
acatcactatattgtttacttattttcaaggacaggaactata |
241 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10333877 |
acatcactatattgtttacttattttcatggacaggaactata |
10333835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 10317441 - 10317396
Alignment:
| Q |
199 |
acatcactatattgtttacttattttcaaggacaggaactatatac |
244 |
Q |
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| T |
10317441 |
acatcactatattgtttatttattttctaggacaggaactatatac |
10317396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 48712917 - 48713096
Alignment:
| Q |
20 |
gaaatcaccaagaacatacctagcactcgaattatgcctttgaagaataccaccaagcgcatgccataagtcctaacgacctctattatcacacggagca |
119 |
Q |
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|||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||| ||| |
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| T |
48712917 |
gaaatcaccaagaacacaccaagcactcgaattatacctttgaagaataccactaagcgcatgccataaatcctgacgacctctactatcacacgacgca |
48713016 |
T |
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| Q |
120 |
tatacatttgtcaattcaaaatcaacattatttgtaataaacttccctttcacaatcaaagagttagataaaaccatcga |
199 |
Q |
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| T |
48713017 |
taaacatttgccaaaccaaaatcaacattatttgtaagaaacttccctttcacaatcaaagagttaggtaaaaccatcga |
48713096 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 22105970 - 22105787
Alignment:
| Q |
20 |
gaaatcaccaagaacatacctagcactcgaattatgcctttgaagaataccaccaagcgcatgccataagtcctaacgacctctattatcacacggagca |
119 |
Q |
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|||||||||||||||| ||| ||||||||||||||| | ||||||||||| |||| |||||| |||||| ||| | ||||||||||||||||||||||| |
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| T |
22105970 |
gaaatcaccaagaacacaccatgcactcgaattatgcatctgaagaatacctccaaacgcatgtcataagccctgaggacctctattatcacacggagca |
22105871 |
T |
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| Q |
120 |
tatacatttgtcaattcaaaatcaacattatttgtaataaacttccctttcacaatcaaagagttagataaaaccatcgacatc |
203 |
Q |
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| T |
22105870 |
taaacatttgccaacccaaaatcaacattatttgtaagaaacttccctttaacaatcaaagagttaggtaaaaccatccacatc |
22105787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0938 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0938
Description:
Target: scaffold0938; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 2360 - 2267
Alignment:
| Q |
98 |
acctctattatcacacggagcatatacatttgtcaattcaaaatcaacattatttgtaataaacttccctttcacaatcaaagagttagataaa |
191 |
Q |
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|||||||||||||||||| |||| ||||| | || ||| |||||||||||| | |||||| ||||||| |||||||||| ||||||||| |
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| T |
2360 |
acctctattatcacacggcacataaacattggcaaaaataaagtcaacattatttttcataaacgtccctttgacaatcaaagcattagataaa |
2267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 22092 - 22185
Alignment:
| Q |
98 |
acctctattatcacacggagcatatacatttgtcaattcaaaatcaacattatttgtaataaacttccctttcacaatcaaagagttagataaa |
191 |
Q |
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|||||||||||||||||| |||| ||||| | || ||| |||||||||||| | |||||| ||||||| |||||||||| ||||||||| |
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| T |
22092 |
acctctattatcacacggcacataaacattggcaaaaataaagtcaacattatttttcataaacgtccctttgacaatcaaagcattagataaa |
22185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 32260 - 32353
Alignment:
| Q |
98 |
acctctattatcacacggagcatatacatttgtcaattcaaaatcaacattatttgtaataaacttccctttcacaatcaaagagttagataaa |
191 |
Q |
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|||||||||||||||||| |||| ||||| | || ||| |||||||||||| | |||||| ||||||| |||||||||| ||||||||| |
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| T |
32260 |
acctctattatcacacggcacataaacattggcaaaaataaagtcaacattatttttcataaacgtccctttgacaatcaaagcattagataaa |
32353 |
T |
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