View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10271_low_99 (Length: 243)

Name: NF10271_low_99
Description: NF10271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10271_low_99
NF10271_low_99
[»] chr6 (12 HSPs)
chr6 (1-226)||(31566218-31566443)
chr6 (1-201)||(33390834-33391031)
chr6 (4-199)||(33403375-33403567)
chr6 (2-208)||(33265644-33265847)
chr6 (2-208)||(33274788-33274991)
chr6 (1-199)||(33060316-33060511)
chr6 (5-201)||(33307251-33307444)
chr6 (2-199)||(33361260-33361454)
chr6 (6-194)||(33641746-33641931)
chr6 (7-201)||(33412685-33412876)
chr6 (1-200)||(33288336-33288532)
chr6 (169-201)||(9169617-9169649)
[»] chr2 (1 HSPs)
chr2 (1-199)||(17437813-17438008)
[»] scaffold1749 (1 HSPs)
scaffold1749 (1-199)||(907-1102)
[»] scaffold0428 (1 HSPs)
scaffold0428 (1-199)||(9668-9863)
[»] chr4 (6 HSPs)
chr4 (1-114)||(31476222-31476335)
chr4 (1-137)||(31501309-31501445)
chr4 (1-137)||(31030513-31030649)
chr4 (1-198)||(31496075-31496275)
chr4 (1-137)||(31020632-31020768)
chr4 (5-137)||(31488784-31488916)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31566443 - 31566218
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31566443 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 31566344  T
Q  101 tcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31566343 tcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttactgctgctagccatctgaataa 31566244  T
Q  201 gttcaattgttaaagaactatattgg 226  Q
    ||||||||||||||||||||||||||    
T  31566243 gttcaattgttaaagaactatattgg 31566218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 33390834 - 33391031
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    ||||||||||||||||||||||||| | | |||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  33390834 tatggattcacctttttgaagatttctgttatcccgaaatacaagaatgccttttgtttccagggcatcaaaaagaaaatcaatgaaattgttgcgagtg 33390933  T
Q  101 tcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaataa 200  Q
    |||||||||| ||| |||||||| ||||||||||||||   |||| |||||||||| |||||||||| ||||||||||||  ||||||||||||||||||    
T  33390934 tcttcacctcggaaggtgacaaacacatcataataata---tctttttgaagaagtcacaagagctgaagatgagttgctattgctagccatctgaataa 33391030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 33403375 - 33403567
Alignment:
Q  4 ggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtgtct 103  Q
    ||||||||| | ||||||||| || ||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||||||    
T  33403375 ggattcaccctgttgaagattagtgtcatctcgaaatgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtgaaattgttccgagtgtct 33403474  T
Q  104 tcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaata 199  Q
    |||||||| || |||| ||| ||||| ||||||   ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  33403475 tcacctctaaaggtgataaacacatcgtaataa---tttcttcttgaagaagtcacaagagctgaagacgagttgctgctgctagccatctgaata 33403567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 33265644 - 33265847
Alignment:
Q  2 atggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtgt 101  Q
    ||||||||||||||| ||||||| || ||||||  |||||||| ||| |||||||||| || ||||||||||||||||||  |||||||||| ||||| |    
T  33265644 atggattcaccttttggaagattagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtat 33265743  T
Q  102 cttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaataag 201  Q
    ||||||||||||| |||||||||||||||||||||   ||||||||||| |||||  ||||| ||| ||||||||||||| |||||||||||||||||||    
T  33265744 cttcacctctgaaggtgacaaatacatcataataa---tttcttcttgatgaagtcccaagaactgaagatgagttgctggtgctagccatctgaataag 33265840  T
Q  202 ttcaatt 208  Q
    || ||||    
T  33265841 ttaaatt 33265847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 33274788 - 33274991
Alignment:
Q  2 atggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtgt 101  Q
    ||||||||||||||| ||||||| || ||||||  |||||||| ||| |||||||||| || ||||||||||||||||||  |||||||||| ||||| |    
T  33274788 atggattcaccttttggaagattagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtat 33274887  T
Q  102 cttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaataag 201  Q
    ||||||||||||| |||||||||||||||||||||   ||||||||||| |||||  ||||| ||| ||||||||||||| |||||||||||||||||||    
T  33274888 cttcacctctgaaggtgacaaatacatcataataa---tttcttcttgatgaagtcccaagaactgaagatgagttgctggtgctagccatctgaataag 33274984  T
Q  202 ttcaatt 208  Q
    || ||||    
T  33274985 ttaaatt 33274991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 33060316 - 33060511
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    |||| |||||||||||||||||||  |  ||||||||||||| | ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||     
T  33060316 tatgcattcacctttttgaagattaatgacatcccgaaataccataatgccttttgtttcaagggcatcaaaaagaaaatcagtgaaattgttgcgagta 33060415  T
Q  101 tcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaata 199  Q
    ||||||||||| || |||||||| |||||||||| ||  |||||  |||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  33060416 tcttcacctctaaaggtgacaaacacatcataatgat-ttttct--ttgaagaagtcacaagagctgaagatgatttgctgctgctagccatctgaata 33060511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 33307251 - 33307444
Alignment:
Q  5 gattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtgtctt 104  Q
    |||||||| ||||||||||| || |||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| | || ||||||||||||||||    
T  33307251 gattcacccttttgaagattagtgtcatcccgaaatgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtaaagttgttgcgagtgtctt 33307350  T
Q  105 cacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaataag 201  Q
    |||||||||| |||||||| |||||   |||||||||  ||||||||||||| |||||||||  ||| || ||| ||||||||||||||||| ||||    
T  33307351 cacctctgaaggtgacaaacacatc---ataatagttgtttcttgaagaagtcacaagagctaaagaagaattgttgctgctagccatctgattaag 33307444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 33361260 - 33361454
Alignment:
Q  2 atggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtgt 101  Q
    ||||||||||||||| ||||||| || ||||||  |||||||| ||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  33361260 atggattcaccttttggaagattagtgtcatccaaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatcagtgaaattgttgcgagtgt 33361359  T
Q  102 cttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaata 199  Q
    |||||||||| ||  ||||||| |||||||||| ||  |||||  |||||||||| |||||||||| |||||||||| ||||||||||||||||||||    
T  33361360 cttcacctctaaagatgacaaacacatcataatgat-ttttct--ttgaagaagtcacaagagctgaagatgagttgttgctgctagccatctgaata 33361454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 33641931 - 33641746
Alignment:
Q  6 attcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtgtcttc 105  Q
    |||||||||||||||||||  | |||||||||||||| | ||| ||||||| ||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  33641931 attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc 33641832  T
Q  106 acctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatct 194  Q
    ||||||| | |||||||| |||||||||||||  |||||  ||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  33641831 acctctgtaggtgacaaacacatcataataat-ttttct--ttgaagaagttacaagagctaaagatgagttgctgctactagccatct 33641746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 33412685 - 33412876
Alignment:
Q  7 ttcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtgtcttca 106  Q
    ||||||||||| ||||||||| ||||||| |||| || |||||||||| |||||||  |||||||||||| ||||| |||||||||||||||||||||||    
T  33412685 ttcaccttttttaagatttgtgtcatccctaaatgcataaatacctttggtttcaagtgcatcaaaaagataatcagtgaaattgttgcgagtgtcttca 33412784  T
Q  107 cctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaataag 201  Q
    |||||||| |||||||| ||||||||||||   ||||||||||||||||| |||||||||  |||||||||||| ||| | ||||| ||| ||||    
T  33412785 cctctgaaggtgacaaacacatcataataa---tttcttcttgaagaagtcacaagagctaaagatgagttgctactgttggccatttgattaag 33412876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 33288336 - 33288532
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    |||||||||||||||||||||||| || ||||||| |||| || ||||||| ||||||| ||  ||||| || ||| || || |||||||||||||||||    
T  33288336 tatggattcacctttttgaagattggtgtcatccctaaatgcataaataccgtttgttttaagagcatctaatagataaccagtgaaattgttgcgagtg 33288435  T
Q  101 tcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaataa 200  Q
    || || ||||| || |||| ||| || || |||| |   ||||| |||  ||| || || | |||| | |||||||||||||||||||||||||||||||    
T  33288436 tcatcgcctctaaaggtgataaacacgtcgtaatga---tttctccttctagatgtcaccatagctatggatgagttgctgctgctagccatctgaataa 33288532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 9169617 - 9169649
Alignment:
Q  169 agatgagttgctgctgctagccatctgaataag 201  Q
    ||||||||||||||||||||||||| |||||||    
T  9169617 agatgagttgctgctgctagccatcagaataag 9169649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 17438008 - 17437813
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    |||||||||||||||||||||||| || ||||| |||||| |||||||  ||||| |||||| ||| ||||||||||||||| ||||||||||||||||     
T  17438008 tatggattcacctttttgaagattagtgtcatctcgaaatgcaaaaatgtcttttctttcaagggcgtcaaaaagaaaatcagtgaaattgttgcgagta 17437909  T
Q  101 tcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaata 199  Q
    ||||||||||| || |||||||| |||||||||| ||  |||||  |||||||||| |||||||||| || ||| |||||||| |||||||||||||||    
T  17437908 tcttcacctctaaaggtgacaaacacatcataatgat-ttttct--ttgaagaagtcacaagagctgaagttgatttgctgctactagccatctgaata 17437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 907 - 1102
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    |||||||||||| ||| |||||||||| |||||||  ||  || ||||||||||| |||||| |||| |||||||||||| | ||||||||||||||||     
T  907 tatggattcaccctttggaagatttgtgtcatccctgaaagcataaataccttttctttcaagggcagcaaaaagaaaattagtgaaattgttgcgagta 1006  T
Q  101 tcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaata 199  Q
    |||||||||||||| |||||||| || |||||| ||   ||||| ||||   |||  || ||||| ||||| |||||||||||||||||||||||||||    
T  1007 tcttcacctctgaaggtgacaaacacgtcataacaa---tttctccttggcaaaggcaccagagccgtagacgagttgctgctgctagccatctgaata 1102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 9668 - 9863
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    |||||||||||| ||| |||||||||| |||||||  ||  || ||||||||||| |||||| |||| |||||||||||| | ||||||||||||||||     
T  9668 tatggattcaccctttggaagatttgtgtcatccctgaaagcataaataccttttctttcaagggcagcaaaaagaaaattagtgaaattgttgcgagta 9767  T
Q  101 tcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctagccatctgaata 199  Q
    |||||||||||||| |||||||| || |||||| ||   ||||| ||||   |||  || ||||| ||||| |||||||||||||||||||||||||||    
T  9768 tcttcacctctgaaggtgacaaacacgtcataacaa---tttctccttggcaaaggcaccagagccgtagacgagttgctgctgctagccatctgaata 9863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 31476335 - 31476222
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    |||||||||||||||||||||||| || ||||||| |||| |||||| |||||||  ||| | |||||||||||| |||||| ||||||||||||||||     
T  31476335 tatggattcacctttttgaagattagtgtcatccctaaatgcaaaaacacctttttcttcgagggcatcaaaaaggaaatcagtgaaattgttgcgagta 31476236  T
Q  101 tcttcacctctgaa 114  Q
    ||||||||||||||    
T  31476235 tcttcacctctgaa 31476222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 31501445 - 31501309
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    |||||||||||||||| ||||||| || ||||||| |||| ||| ||| |||| | | |  |||||||||||||||  || | |||||||||||||||||    
T  31501445 tatggattcaccttttggaagattagtgtcatccctaaatgcaagaatgccttctctgttgaaggcatcaaaaagatgataagtgaaattgttgcgagtg 31501346  T
Q  101 tcttcacctctgaaagtgacaaatacatcataataat 137  Q
    ||||||||||| |||||||||||  ||||||||||||    
T  31501345 tcttcacctctaaaagtgacaaacgcatcataataat 31501309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 31030513 - 31030649
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    |||||||||||||||||||||||| || || || | |||| ||||||| |||||| ||| || |||| ||||||||  ||||||||| |||  ||||||     
T  31030513 tatggattcacctttttgaagattagtgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagta 31030612  T
Q  101 tcttcacctctgaaagtgacaaatacatcataataat 137  Q
    ||||| ||||| || |||||||| |||||||||||||    
T  31030613 tcttcgcctctaaaggtgacaaacacatcataataat 31030649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 31496275 - 31496075
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    |||||||||||||||| ||||||| || ||||| | |||| || |||| |||| | | |  |||| ||||||||||  |||| |||||||||||||||||    
T  31496275 tatggattcaccttttggaagattagtgtcatctctaaatgcagaaatgccttctctgtggaaggtatcaaaaagatgatcagtgaaattgttgcgagtg 31496176  T
Q  101 tcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtaga---tgagttgctgctgctagccatctgaa 197  Q
    || |||||||| || |||||||| || ||||||| || | | || ||||  || || || ||||||| |||    |||||||||||||||||||||||||    
T  31496175 tcctcacctctaaaggtgacaaacacgtcataatgattgctcctccttggcgatgtcactagagctgaagaagtggagttgctgctgctagccatctgaa 31496076  T
Q  198 t 198  Q
    |    
T  31496075 t 31496075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 31020632 - 31020768
Alignment:
Q  1 tatggattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtg 100  Q
    |||||||||||||||||||||||| |  || || | |||| ||||||| |||||| ||| || |||| ||||||||  ||||||||| |||  ||||||     
T  31020632 tatggattcacctttttgaagattagcgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagta 31020731  T
Q  101 tcttcacctctgaaagtgacaaatacatcataataat 137  Q
    ||||| ||||| || |||||||| |||||||||||||    
T  31020732 tcttcgcctctaaaggtgacaaacacatcataataat 31020768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 31488916 - 31488784
Alignment:
Q  5 gattcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtgtctt 104  Q
    ||||||||||||||||| || || ||||| | |||  ||||||| |||||| ||| || |||| ||||||||  |||| | || |||  |||||| ||||    
T  31488916 gattcacctttttgaagcttagtgtcatctctaaacgcaaaaatgccttttctttgaagggcagcaaaaagatgatcagtaaagttgaagcgagtatctt 31488817  T
Q  105 cacctctgaaagtgacaaatacatcataataat 137  Q
    |||||||||| |||||||| || ||||||||||    
T  31488816 cacctctgaaggtgacaaacacgtcataataat 31488784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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