View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10272_high_1 (Length: 417)
Name: NF10272_high_1
Description: NF10272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10272_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 55143939 - 55143669
Alignment:
| Q |
1 |
cagccaaacagttagggatatcggtaatggtaaattttgatttgaagtataggtcgatacttcatagtaacatcacaagagtattccggaagatgatatt |
100 |
Q |
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| T |
55143939 |
cagccaaacagttagggatatcggtaatggtaaattttgatttgaaatataggtcgatacttcatagtaacatcacaagagtattcctgaagatgatatt |
55143840 |
T |
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| Q |
101 |
tgaaatgattctgcacgtatgaatggaaataatggtcgatgtgtcatcaagtaaacgcatcaatattattaaaaatgaagatagtcgacatcaaataagt |
200 |
Q |
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| T |
55143839 |
tgagatgagtctacacctatgaatggaagtaatggtcgacgtgtcatcaagtaaacacatcaatattattaaaaatgaagatagtcgacatcaaataagt |
55143740 |
T |
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| Q |
201 |
atagctgactattaaaactcgataattaaatcgtgcaagtaaaatcaacaagccaacgctaacaattgcta |
271 |
Q |
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| T |
55143739 |
atagctgactattaaaactcgataattaaatcgtgcaagtaaaatcaacaagccaacactaacaattgcta |
55143669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 55143668 - 55143627
Alignment:
| Q |
313 |
aagtgttactaaatgaagtgtcacgtaatcttccctttcatt |
354 |
Q |
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| T |
55143668 |
aagtgttactaaatgaagtgtcacgtaatcttccctttcatt |
55143627 |
T |
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