View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10272_high_5 (Length: 239)
Name: NF10272_high_5
Description: NF10272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10272_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 45 - 219
Target Start/End: Original strand, 26658089 - 26658263
Alignment:
| Q |
45 |
gatgctatttcttacgaacatgttgacgcacgaattgcaagaacacgcccatattgtgtggtgtacctcccaaatgtatatggtttaacgagttttaaat |
144 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26658089 |
gatgctatttcttacgaacatgttcacgcacgaattgcaagaacacgcccatattgtgtggtgtacctcccaaatgtatatggtttaacgagttttaaat |
26658188 |
T |
|
| Q |
145 |
ttgttaacttcaacaatatgcaatttgaacaaatgtgcctccaaaacaaagtctacagaaccttatttatgcata |
219 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26658189 |
ttgttaacttcagcaatatacaatttgaacaaatgtgcctccaaaacaaagtctacagaaccttatttatgcata |
26658263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 45 - 219
Target Start/End: Original strand, 26929677 - 26929851
Alignment:
| Q |
45 |
gatgctatttcttacgaacatgttgacgcacgaattgcaagaacacgcccatattgtgtggtgtacctcccaaatgtatatggtttaacgagttttaaat |
144 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26929677 |
gatgctatttcttacgaacatgttcacgcacgaattgcaagaacacgcccatattgtgtggtgtacctcccaaatgtatatggtttaacgagttttaaat |
26929776 |
T |
|
| Q |
145 |
ttgttaacttcaacaatatgcaatttgaacaaatgtgcctccaaaacaaagtctacagaaccttatttatgcata |
219 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26929777 |
ttgttaacttcagcaatatacaatttgaacaaatgtgcctccaaaacaaagtctacagaaccttatttatgcata |
26929851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 39411069 - 39411224
Alignment:
| Q |
41 |
gagcgatgctatttcttacgaacatgttgacgcacgaattgcaagaacacgcccatattgtgtggtgtacctcccaaatgtatatggtttaacgagtttt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39411069 |
gagcgatgctatttcttacgaacatgttgacgcacgaattgcaagaacacgcccatattgtgtggtgtacctcccagatgtatatggtttaacgagtttt |
39411168 |
T |
|
| Q |
141 |
aaatttgttaacttcaacaatatgcaatttgaacaaatgtgcctccaaaacaaagt |
196 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
39411169 |
aaatttgttaacttctgcaatatacaatttgaataaatgtgcctccaaaacaaagt |
39411224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 17814050 - 17813974
Alignment:
| Q |
49 |
ctatttcttacgaacatgttgacgcacgaattgcaagaacacgcccatattgtgtggtgtacctcccaaatgtatat |
125 |
Q |
| |
|
|||||||||| || ||||||| |||||||| ||||||||| ||||| ||||||| | | ||||||||||||||| |
|
|
| T |
17814050 |
ctatttcttatgagtatgttgaggcacgaatcacaagaacacacccattttgtgtgctttgtctcccaaatgtatat |
17813974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 2881151 - 2880976
Alignment:
| Q |
44 |
cgatgctatttcttacgaacatgttgacgcacgaattgcaagaacacgcccatattgtgtggtgtacctcccaaatgtatatggtttaacgagttttaaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2881151 |
cgatgctatttcttacgaacatgttgacgcacgaattgcaagagcacgcccatattgtgtggtgtaccccccaaatgcatatggtttaacgagttttaaa |
2881052 |
T |
|
| Q |
144 |
tttgttaacttcaacaatatgcaatttgaacaaatgtgcctccaaaacaaagtctacagaaccttatttatgcata |
219 |
Q |
| |
|
||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2881051 |
tttgtgaacttcagcaatatacaatttgaacaaatgtgccttcaaaacaaagtctacagaaccttatttatgcata |
2880976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 3019009 - 3019184
Alignment:
| Q |
44 |
cgatgctatttcttacgaacatgttgacgcacgaattgcaagaacacgcccatattgtgtggtgtacctcccaaatgtatatggtttaacgagttttaaa |
143 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
3019009 |
cgatgctatttcttacgaacatgttaacgcacgaattgcaagagcacgcccatattgtgtggtgtaccccccaaatgcatatggtttaacgagttttaaa |
3019108 |
T |
|
| Q |
144 |
tttgttaacttcaacaatatgcaatttgaacaaatgtgcctccaaaacaaagtctacagaaccttatttatgcata |
219 |
Q |
| |
|
||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3019109 |
tttgtgaacttcagcaatatacaatttgaacaaatgtgccttcaaaacaaagtctacagaaccttatttatgcata |
3019184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 2921927 - 2922043
Alignment:
| Q |
47 |
tgctatttcttacgaacatgttgacgcacgaattgcaagaacacgcccatattgtgtggtgtacctcccaaatgtatatggtttaacgagttttaaattt |
146 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2921927 |
tgctatttcttacaaacatgttgacgcacgaattgcaagaacacacccatattgtgtggtgtacctcccaaatgtatatggtttaacgagttttaaattt |
2922026 |
T |
|
| Q |
147 |
gttaacttcaacaatat |
163 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
2922027 |
gttaacttcagcaatat |
2922043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University