View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10272_low_1 (Length: 463)
Name: NF10272_low_1
Description: NF10272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10272_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 12226213 - 12226426
Alignment:
| Q |
16 |
gcacagacagcacagttcgtgtggcattggacaccgcgactatgaagtttgaccctcgtgttggtaaacagttacggcaagcacgccacataaaattctt |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12226213 |
gcacagacagcacagttcgtggggcattggacaccgcgactatgaagtttgaccctcgt--tggtaaacagttacggcaagaacgccacataaaattctt |
12226310 |
T |
|
| Q |
116 |
aactttcggtggcaatttcaagattccaaatactattccagctacctgtaacatggtgttggttcaagt---cagggtcgttgttaataatgtcccggta |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12226311 |
aactttcggtggcaatttc-agattccaaatactattccagctacctgtaacatggtgttggttcaagtctgcagggtcgttgttaataatgtcccggta |
12226409 |
T |
|
| Q |
213 |
tgcacttcgaacggagt |
229 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
12226410 |
tgcacttcgaacagagt |
12226426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 301 - 453
Target Start/End: Original strand, 12226430 - 12226582
Alignment:
| Q |
301 |
ttccactgttttgcatttacctacagcaggtttgctactttgagttccctccacatgcctccacttgaatcttgcatttttcaattagttttgagtaatg |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12226430 |
ttccactgttttgcatttacctgcagcaggtttgctactttgagttcattccacatgcctccacttgaatcttgcatttttcaattagttttgagttatg |
12226529 |
T |
|
| Q |
401 |
ctattttttgtactgaaataatgatatgttatgttgcctctaaagtgtctgtg |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12226530 |
ctattttttgtactgaaataatgatatgttatgttgcctctaaagtgtttgtg |
12226582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 30465898 - 30465810
Alignment:
| Q |
87 |
ttacggcaagcacgccacataaaattcttaactttcggtggcaatttcaagattccaaatactattccagctacctgtaacatggtgttg |
176 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||||| |||||||| || | |||| |||| ||||||| |||||| ||| ||||||| |
|
|
| T |
30465898 |
ttacggcaagctcgccaaaggaaattcttaactttcgggggcaattttaa-actccagatacaattccagttacctggcacacggtgttg |
30465810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 22 - 270
Target Start/End: Original strand, 42927546 - 42927791
Alignment:
| Q |
22 |
acagcacagttcgtgtggcattggacaccgcgactatgaagtttgaccctcgtgttggtaaacagttacggcaagcacgccacataaaattcttaacttt |
121 |
Q |
| |
|
|||||||||| | || ||||||| || |||||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42927546 |
acagcacagtccatggggcattgaacgccgcgactttgaagtttgac--tcgtgttggtaagcaattacggcaagcacgccacataaaattcttaacttt |
42927643 |
T |
|
| Q |
122 |
cggtggcaatttcaagattccaaatactattccagctacctgtaacatggtgttggttcaagtcagggtcgttgttaataatgtcccggtatgcacttcg |
221 |
Q |
| |
|
||| ||||||||| || ||||| ||||| |||||||| || | ||| ||||||||||||| ||| || || |||| |||||| | |||||||| || |
|
|
| T |
42927644 |
cggcggcaatttc-aggttccatatactgttccagcttccatttacacggtgttggttcaaagcagtgttattattaagaatgtcgcaatatgcactacg |
42927742 |
T |
|
| Q |
222 |
aacggagttattcccatttttctcaaatctacatgtggctgtgtcttgt |
270 |
Q |
| |
|
|| ||| | |||||||| |||||||||||| || || ||| |||||||| |
|
|
| T |
42927743 |
aatggaataattcccatctttctcaaatctccaagtcgctatgtcttgt |
42927791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 42927843 - 42927925
Alignment:
| Q |
274 |
tcgaaaacataatttataaaagctgtgttccactgttttgcatttacctacagcaggtttgctactttgagttccctccacat |
356 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
42927843 |
tcgaaaacataatttataaatgacttgttccattgttttgcgtttacctgcagcaggtttgctactctgagttcgctccacat |
42927925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University