View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10272_low_3 (Length: 353)
Name: NF10272_low_3
Description: NF10272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10272_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 30343767 - 30343415
Alignment:
| Q |
1 |
agaattgaaatcagcatcaagtgaaattgtcaaggaaatagtccatgatcaattgcacttaacaagattaaatgagcttgattcactttctaagcagata |
100 |
Q |
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| T |
30343767 |
agaagtgaaatcagcatcaagtgaaattgtcaaggaaatagtccatgatcaattgcacttaacaagattaaatgagcttgattcactttctaagcagata |
30343668 |
T |
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| Q |
101 |
aaggctcttgaatccatgatgggagaacaaagcaaagattttgacacggaatcacaaagattggattctgatgaagaaaatgttacaagagagtttcttc |
200 |
Q |
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| T |
30343667 |
aaggctcttgaatccatgatgggagaacaaagcaaagattttgacacggaatcacaaagattggattctgatgaagaaaatgttacaagagagtttcttc |
30343568 |
T |
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| Q |
201 |
atatgcttgaggatcaaaagtctagattatacaaactcaaccaatctgaaattccacctttgcatcttgaagaacatgatgataattcttcatcatatgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30343567 |
atatgcttgaggatcaaaagtctagattatacaaacttaaccaatctgaaattccacctttgcatcttgaagaacatgatgataattcttcatcatatgg |
30343468 |
T |
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| Q |
301 |
agaatctaattctcaagtgtatcttcctgaccttggaaaaggtttaggttgtg |
353 |
Q |
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| T |
30343467 |
agaatctaattctcaagtgtatcttcctgaccttggaaaaggtttaggttgtg |
30343415 |
T |
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