View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10272_low_4 (Length: 313)
Name: NF10272_low_4
Description: NF10272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10272_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 25499252 - 25498969
Alignment:
| Q |
19 |
aggcaagtagtaaaactcttataatcattgaagtacacaagaaacaccaactccaaatcatttccaaaggataaataattttcccttttcaagacttcac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25499252 |
aggcaagtagtaaaactcttataatcattgaagtacacaagaaacaccaactccaaatcatttccaaaggataaataattttcccttttcaagacttcac |
25499153 |
T |
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| Q |
119 |
ataattgtcaatggctccatgattatcatagtctaccttgtgcttttagaatggtgagaagattctctttctcatgtcatagctgtaccacccactaata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25499152 |
ataattgtcaatggctccatgattatcatagtctaccttgtgcttttagaatggtgagaagattctctttctcatgtcatagctgtaccacccactaata |
25499053 |
T |
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| Q |
219 |
caaaaaccatagtataaaatctcttcattctttgcttacaaaattcnnnnnnnatagctcattgttgtcttattaactgttctt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25499052 |
caaaaaccatagtataaaatctcttcattctttgcttacaaaattctttttttatagctcattgttgtcttattaactgttctt |
25498969 |
T |
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