View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10272_low_5 (Length: 289)
Name: NF10272_low_5
Description: NF10272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10272_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 6081933 - 6082205
Alignment:
| Q |
1 |
tagttgaggagtgtgagtcattttccttgaactcagagcgtcggtgagatatcaagcacaacacgttatcatattcattgttctctttactttctcaact |
100 |
Q |
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| T |
6081933 |
tagttgaggagtgtgagtcattttccttgaactcagagcgtcggtgagatatcaaacacaacacgttatcatattcattgttctcttcactttctcaact |
6082032 |
T |
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| Q |
101 |
tctatgttctaactaaccatttcttgcacctaaacttatgaatcttcaacttcattcttagaaggtcatgtaagtatggaataaattattttgttaaggt |
200 |
Q |
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| T |
6082033 |
tctatgttctaactaaccatttcttgcacctaaacttatcaaccttcaacttcattcttagaaggtcatgtaagtatgg----------------aaggt |
6082116 |
T |
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| Q |
201 |
aaatattttccttgtgattatagttacattgtaatatttatttgattacaagatttaattattatatggttaaagttgttattgtattt |
289 |
Q |
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| T |
6082117 |
aaatattttccttgtgattatagttacattgtaatatttatttgattacaagatttaattattatatggttaaagttgttattgtattt |
6082205 |
T |
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