View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_10 (Length: 442)
Name: NF10273_high_10
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 33696780 - 33696483
Alignment:
| Q |
16 |
gtacaagggataaaaacaacttaaaacttcatcatcaacccaattcgacttcttcactcaaagaacaacaactactcaagttactcatatcaacatctac |
115 |
Q |
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| T |
33696780 |
gtacaagggataaaaacaacttaaaacttcatcatcaacccaattcgacttcttcactcaaagaa--acaactactcaagttactcatatcaacatctac |
33696683 |
T |
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| Q |
116 |
aaagagggcaaggtgattttggttttttgcaagtcacaactgttttcggtggtaatgatgatcaccatttcgttaggtgtgttgctggtgtatttgaagc |
215 |
Q |
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| T |
33696682 |
aaagagggcaaggtgatgttggttttttgcaagtcacaactgttttcggtggtaatgatgatcaccatttcgttaggtgtgttgctggtgtatttgaagc |
33696583 |
T |
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| Q |
216 |
ggaagagcaccaatgatatgctctttttgcgcgtgaatcgggtagaaactgatctcttgagttgggt--atataactccaacggataataaatttttcct |
313 |
Q |
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| T |
33696582 |
ggaagagcaccaatgatatgctctttttgcgcgtgaatcaggtagaaactgatctcttgagttgggtacatataactacaacggataataaatttttcct |
33696483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 300 - 431
Target Start/End: Complemental strand, 33696261 - 33696130
Alignment:
| Q |
300 |
aataaatttttccttcaagattaaacgttattgcattctttgagtttaattcgaatccatgacctctatttaaactatatatnnnnnnntctttatcatc |
399 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33696261 |
aataaatttttccttcaagattaaacgtcattgcattctttgagcttaattcgaatccatgacctctatttaaactatatataaaaaaatctttatcatc |
33696162 |
T |
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| Q |
400 |
tcattcaaatattcttttggtcataagttctt |
431 |
Q |
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| T |
33696161 |
tcattcaaatattctttgggtcataagttctt |
33696130 |
T |
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