View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_12 (Length: 429)
Name: NF10273_high_12
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 1704120 - 1704420
Alignment:
| Q |
18 |
tgttacaatcaatccccaagtgatacaaatccctggaaaagtgatagagccatgtattttgtttactgctacagcaccacaaccagcaaacactagaaaa |
117 |
Q |
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| T |
1704120 |
tgttacaatcaacccccaagtgatgcaaatccctggaaaagtgatagagccatggatcttgtttactgctacagcaccacacccagcaaacactagaaaa |
1704219 |
T |
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| Q |
118 |
tatgtaccaataacttctgcagttaccttttgtatcaaggttattacacgccttgatgaacaacaatgtttcaagagggaattgtttccttggtgtttga |
217 |
Q |
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| T |
1704220 |
tatgtaccaataacttctgcagttaccttttgtatcaaggttattacacgccttgatgaacaacaatgtttcaagagggaattgtttccttggtgtttga |
1704319 |
T |
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| Q |
218 |
ttgccattgatgctatatattttctcaactcacatgtagttggagagataggtgcattgtgtgtgtctatgtgtatatatagatataagaagaagaagaa |
317 |
Q |
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| T |
1704320 |
ttgccattgatgctatatattttctcaactcacatgtagttggagagataggtgcattgtgtgtgtctatgtgtatatatagacataagaagaagaagaa |
1704419 |
T |
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| Q |
318 |
g |
318 |
Q |
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| T |
1704420 |
g |
1704420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 1704481 - 1704525
Alignment:
| Q |
376 |
taggtcatttggag--ggagtgatataagagataaggtgatgtct |
418 |
Q |
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| T |
1704481 |
taggtcatttggagagggagtgatataagagataaggtgatgtct |
1704525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 34019152 - 34019045
Alignment:
| Q |
31 |
ccccaagtgatacaaatccctggaaaagtgatagagccatgtattttgtttactgctacagcaccacaaccagcaaacactagaaaatatgtaccaataa |
130 |
Q |
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| T |
34019152 |
ccccaagtgatacatacccctggaaatgtgacagacccatagatcttgtccactgctacagacccacatccagcaaacaccacaaaatatgtcccaatga |
34019053 |
T |
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| Q |
131 |
cttctgca |
138 |
Q |
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| T |
34019052 |
tttctgca |
34019045 |
T |
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