View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_14 (Length: 421)
Name: NF10273_high_14
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 26867212 - 26866863
Alignment:
| Q |
20 |
ctaatttgttgcctgaactaatgaatgtacattttacatggaagtgacgatgcaaagagttggttaactaatctgtattggtcgttggcgtcaacatgat |
119 |
Q |
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| T |
26867212 |
ctaatttgttgcctgaactaatgaatgtacgttttacatagaagtgacgatgcaaagagttggttaactaatctgtattggtcgttggcgtctgcatgat |
26867113 |
T |
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| Q |
120 |
aatttagaagtttaacccgattagtctgataaaatattcctatacttgattagaatatctttacattaaatataaaaatattctggtatagggatattct |
219 |
Q |
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| T |
26867112 |
aatttagaagtttaacccgattagtctgataaaatattcctatacttgattagaatatctttacattaaatataaaaatattctggtatagggatattct |
26867013 |
T |
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| Q |
220 |
atcataatcgaagttgttacttgttagctaacgcttcaaagcgaaaatgtatatataattaggacaaatcctgttgagccaacgttttttacttcaaccg |
319 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26867012 |
atcaaaatcgaagttgttacttgttagctaacgctt-----cgaaaatgtatatataattaggacaaatcctgttgagccaacgttttttacttcaactg |
26866918 |
T |
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| Q |
320 |
tacagcccaatatatagtactatatccgttcctgattataagaccattttgagaa |
374 |
Q |
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|||| ||||||||||||||||| ||||| | | ||||||||||| ||||||||| |
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| T |
26866917 |
tacaacccaatatatagtactacctccgtccttaattataagacccttttgagaa |
26866863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 34948688 - 34948651
Alignment:
| Q |
337 |
tactatatccgttcctgattataagaccattttgagaa |
374 |
Q |
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| T |
34948688 |
tactacatccgttcctaattataagaccattttgagaa |
34948651 |
T |
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