View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_15 (Length: 410)
Name: NF10273_high_15
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 44817783 - 44818160
Alignment:
| Q |
17 |
catcaatatttattttgagggtcgtcttcaacactctataagccccgtttaaggccaac-ttagtgacggttgaatcgcgacaaatgtttaaggaatatt |
115 |
Q |
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| T |
44817783 |
catcaatatttattttgagggtcgtcttcaacactctataagccccgtgtagggcccaccttagtgactgttgaatcgcgacaaatgtttaaggaatgtt |
44817882 |
T |
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| Q |
116 |
actcttctcactttatataactcagccgcagttaactatattttgatttctacctaagatattttttagagcggtttaatcatctttaaatcaatttaac |
215 |
Q |
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| T |
44817883 |
actcttctcactttacataactcaactgtagttaactatgttttgatttctacctaagatattttttagagcggtttaatcatctttaaatcaatttaac |
44817982 |
T |
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| Q |
216 |
caatcttacaagtgttcaacgacacttaattgttgttggataactgaacgggtacctacaactttgtaatcacaattatgtttttggtttctagtgggtc |
315 |
Q |
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| T |
44817983 |
caatcttacaagtgttcaacgacactttactgttgttgcaaaactgaacgggaacctacaactttgtaatcacaattatgtttttggtttctagtgggtc |
44818082 |
T |
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| Q |
316 |
ccatgttcctatccattcccatggcgtttatttgtgggaaacgttgaccattcctagtgcctcttaaaaagagcatgc |
393 |
Q |
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| T |
44818083 |
ccatgttcctatccattcccatggcgtttatttgtgggaaacgttgaccattcctagtgcctcttaaaaagagcatgc |
44818160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 23358147 - 23358060
Alignment:
| Q |
304 |
ttctagtgggtcccatgttcctatccattcccatggcgtttatttgtgggaaacgttgaccattcctagtgcctcttaaaaagagcatg |
392 |
Q |
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| T |
23358147 |
ttctagtgggtcccatgttcc-atcaatccacatgtcgtttatgtgtgggaaacgttgaccattcctactgcctcttaaaaagagcatg |
23358060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 16671797 - 16671869
Alignment:
| Q |
173 |
gatattttttagagcggtttaatca-tctttaaatcaatttaaccaatcttacaagtgttcaacgacacttaa |
244 |
Q |
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| T |
16671797 |
gatattttttagagcaattcaatcaatttttaaatcaatttaaccgatcttaaaagtgttgaaccacatttaa |
16671869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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