View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_18 (Length: 393)
Name: NF10273_high_18
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 145868 - 145501
Alignment:
| Q |
18 |
ccaaccactaactatgtatctcttatgaggatcttcttcatcagcaacaacctcacaaccaaatgcatcaactgcatcttgatctctatcaagttgagtg |
117 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
145868 |
ccaaccactagctatgtatctcttatgaggatctacttcatcagcaacaacctcacaaccaaatgcatcaactgcatcttgatctctatcaagttgagtg |
145769 |
T |
|
| Q |
118 |
agcatgatgttcttatcagaactcaaaacaccttcatatgtaaggtgatgagggagacgctacatattcaaaataaattattttagtattaatccaattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
145768 |
agcatgatgttcttatcagaactcaaaacaccttcatatgtaaggtgatgagggagacgctacatattcaaaataaattattttagaattaatccaattt |
145669 |
T |
|
| Q |
218 |
aaaattgtaaagaaacttatataaataatacttacaagcttgtgatttggttgtacatgagattcattcacaataatctcccatgaatttctttgaacat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
145668 |
aaaattgtaaagaaacttatataaataatacttacaagcttgtgatttggatgtacatgatattcattcacaataatctcccatgaatttcttttaacat |
145569 |
T |
|
| Q |
318 |
tcaaaaatggaggcacttccactggctcacggtaattgtcaacaattacaatttcagatttctctgct |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
145568 |
tcaaaaatggaggcacttccactggctcacggtaattgtcaacaattacaatttcagatttctctgct |
145501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 30 - 364
Target Start/End: Original strand, 19784438 - 19784771
Alignment:
| Q |
30 |
tatgtatctcttatgaggatcttcttcatcagcaacaacctcacaaccaaatgcatcaactgcatcttgatctctatcaagttgagtgagcatga-tgtt |
128 |
Q |
| |
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|||||||||||||| ||||||| |||| |||| || ||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||| | |||| |
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| T |
19784438 |
tatgtatctcttataaggatctccttcttcagtaaaaacctcacagttaaatgcatcaactgcatcttgatctcgatcaatttgagtcagcataaatgtt |
19784537 |
T |
|
| Q |
129 |
cttatcagaactcaaaacaccttcatatgtaaggtgatgagggagacgctacatattcaaaataaattattttagtattaatccaatttaaaattgtaaa |
228 |
Q |
| |
|
||| ||| | ||||||| ||||||||||||||| ||| ||||||||||| ||||||||||| | ||| | |||||||| |||| |||||| | || |
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|
| T |
19784538 |
cttctcaaagctcaaaataccttcatatgtaagatgagcagggagacgctgcatattcaaaagga--tatgcttgtattaatgcaatataaaatagccaa |
19784635 |
T |
|
| Q |
229 |
gaaacttatataaataatacttacaagcttgtgatttggttgtacatgagattcattcacaataatctcccatgaatttctttgaacattcaaaaatgga |
328 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| | ||||||||| |||||| |
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|
| T |
19784636 |
gaaacttatataaataacacttacaagtttgtgattgggttgaatatgagattcattgacaatgatctcccatgaatttctcttaacattcaagaatgga |
19784735 |
T |
|
| Q |
329 |
ggcacttccactggctcacggtaattgtcaacaatt |
364 |
Q |
| |
|
|||| ||| ||||||||||| |||||||||| |||| |
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|
| T |
19784736 |
ggcaattcaactggctcacgataattgtcaagaatt |
19784771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 21650767 - 21650423
Alignment:
| Q |
18 |
ccaaccactaactatgtatctcttatgaggatcttcttcatcagcaacaacctcacaaccaaatgcatcaactgcatcttgatctctatcaagttgagtg |
117 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |||| |||| | |||||| || ||||| ||| ||||||||| |||||| ||||| |||||| |
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|
| T |
21650767 |
ccaaccactatatatgtatctcttataaggatctccttcttcagtcaaaacctcgcagttaaatgaatccactgcatctcgatctcgatcaatttgagtt |
21650668 |
T |
|
| Q |
118 |
agcatgatgttcttatcagaactcaaaacaccttcatatgtaaggtgatgagggagacgctacatattcaaaataaattattttagtattaatccaattt |
217 |
Q |
| |
|
||||| |||||||| ||||| ||||||| ||||||||||||||| ||| ||||||||||| |||||||||||| | ||| | |||||||| |||| | |
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|
| T |
21650667 |
agcataatgttcttctcagagctcaaaataccttcatatgtaagatgagcagggagacgctgcatattcaaaatga--tatgcttgtattaatgcaatat |
21650570 |
T |
|
| Q |
218 |
aaaattgtaaagaaacttatataaataatacttacaagcttgtgatttggttgtacatgagattcattcacaataatctcccatgaatttctttgaacat |
317 |
Q |
| |
|
||||| | |||||| ||||| |||||| ||||||||| |||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| | ||||| |
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|
| T |
21650569 |
aaaatagccaagaaatttataaaaataacacttacaagtttgtgattgggttgcatatgagattcattgacaatgatctcccatgaatttctcttaacat |
21650470 |
T |
|
| Q |
318 |
tcaaaaatggaggcacttccactggctcacggtaattgtcaacaatt |
364 |
Q |
| |
|
|||| |||||||||| ||| || |||||||| |||||||||| |||| |
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|
| T |
21650469 |
tcaagaatggaggcaattcaacgggctcacgataattgtcaagaatt |
21650423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 14572463 - 14572804
Alignment:
| Q |
21 |
accactaactatgtatctcttatgaggatcttcttcatcagcaacaacctcacaaccaaatgcatcaactgcatcttgatctctatcaagttgagtgagc |
120 |
Q |
| |
|
||||||| |||||||||||||| ||||||| |||| |||| | || ||| | ||||| ||| ||||||||| |||||| ||||| |||||| ||| |
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|
| T |
14572463 |
accactagatatgtatctcttataaggatctccttcttcagtcaaaatctcgtagttaaatgaatccactgcatctcgatctcgatcaatttgagtcagc |
14572562 |
T |
|
| Q |
121 |
atgatgttcttatcagaactcaaaacaccttcatatgtaaggtgatgagggagacgctacatattcaaaataaattattttagtattaatccaatttaaa |
220 |
Q |
| |
|
|| |||||||| ||||| ||||||| ||||||||||||||| ||| ||||||||||| |||||||||||| | ||| | |||||||| |||| |||| |
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| T |
14572563 |
ataatgttcttctcagagctcaaaataccttcatatgtaagatgagtagggagacgctgcatattcaaaatga--tatgcttgtattaatgcaatataaa |
14572660 |
T |
|
| Q |
221 |
attgtaaagaaacttatataaataatacttacaagcttgtgatttggttgtacatgagattcattcacaataatctcccatgaatttctttgaacattca |
320 |
Q |
| |
|
|| | |||||| ||||| |||||| ||||||||| |||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| | |||||||| |
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|
| T |
14572661 |
atagccaagaaatttataaaaataacacttacaagtttgtgattgggttgaatatgagattcattgacaatgatctcccatgaatttctcttaacattca |
14572760 |
T |
|
| Q |
321 |
aaaatggaggcacttccactggctcacggtaattgtcaacaatt |
364 |
Q |
| |
|
| |||||||||| ||| ||||||||||| |||||||||| |||| |
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|
| T |
14572761 |
agaatggaggcaattcaactggctcacgataattgtcaagaatt |
14572804 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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