View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10273_high_2 (Length: 670)

Name: NF10273_high_2
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10273_high_2
NF10273_high_2
[»] chr6 (5 HSPs)
chr6 (11-655)||(24198100-24198743)
chr6 (250-343)||(24197686-24197779)
chr6 (365-395)||(18860315-18860345)
chr6 (365-395)||(23161399-23161429)
chr6 (272-320)||(22748614-22748662)
[»] chr5 (5 HSPs)
chr5 (11-655)||(43449884-43450527)
chr5 (250-344)||(43449469-43449563)
chr5 (365-395)||(37262925-37262955)
chr5 (273-336)||(7388446-7388510)
chr5 (272-347)||(31193964-31194039)
[»] chr1 (2 HSPs)
chr1 (241-347)||(30552684-30552790)
chr1 (300-348)||(51243214-51243262)
[»] chr3 (6 HSPs)
chr3 (249-343)||(35274444-35274538)
chr3 (289-337)||(11376178-11376226)
chr3 (270-348)||(34937412-34937491)
chr3 (365-395)||(10040244-10040274)
chr3 (365-395)||(11372276-11372306)
chr3 (272-320)||(46883639-46883687)
[»] chr2 (5 HSPs)
chr2 (249-344)||(17737507-17737602)
chr2 (361-395)||(24260126-24260160)
chr2 (249-346)||(17736978-17737075)
chr2 (245-347)||(22563209-22563311)
chr2 (365-395)||(24251418-24251448)
[»] chr8 (4 HSPs)
chr8 (247-345)||(33076167-33076265)
chr8 (365-395)||(21110450-21110480)
chr8 (300-344)||(9135044-9135088)
chr8 (274-353)||(14999164-14999243)
[»] chr4 (8 HSPs)
chr4 (246-348)||(2515012-2515115)
chr4 (272-346)||(17914975-17915049)
chr4 (249-348)||(32160998-32161097)
chr4 (300-346)||(24145511-24145557)
chr4 (272-341)||(1856708-1856777)
chr4 (245-318)||(8538327-8538400)
chr4 (249-346)||(32160311-32160408)
chr4 (146-194)||(32160901-32160949)
[»] chr7 (7 HSPs)
chr7 (300-338)||(17186189-17186227)
chr7 (289-346)||(9905208-9905265)
chr7 (300-347)||(34589336-34589383)
chr7 (236-343)||(45560592-45560699)
chr7 (301-347)||(48737958-48738004)
chr7 (276-321)||(19549340-19549385)
chr7 (301-346)||(48737257-48737302)
[»] scaffold0417 (1 HSPs)
scaffold0417 (249-346)||(9280-9377)


Alignment Details
Target: chr6 (Bit Score: 553; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 11 - 655
Target Start/End: Original strand, 24198100 - 24198743
Alignment:
Q  11 gagaagaagaaactaatttatttcaaaagatgagaagaacaaactaatttattttgagtggtggttcagcggtgacagcgatgaagacatcaaacaacaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24198100 gagaagaagaaactaatttatttcaaaagatgagaagaacaaactaatttattttgagtggtggttcagcggtgacagcgatgaagacatcaaacaacaa 24198199  T
Q  111 cgatgacggcgacatggtggaggttgtcggtgagggggagaggaagagtggtggttgtgggagaagaagggaacgtgagaagaagaaactaatttatttt 210  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24198200 cgatgacggcgacatggtggaggttgtcggtgagagggagaggaagagtggtggttgtgggagaagaagggaacgtgagaagaagaaactaatttatttt 24198299  T
Q  211 aatttaataaataatacttgtagtcttgtattttattttaaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggacta 310  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24198300 aatttaataaataatacttgtagtcttgtattctattttaaatctcagcccttaaactttattttgccacatgtcctacatccaaaatataaatggacta 24198399  T
Q  311 aatggagcattaggtaaatggagcatatctgaactcatatttttctcccgtttcaattttaaattagcaaccacataatatcaaaaaattatttctccat 410  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24198400 aatggagcattaggtaaatagagcatatctgaactcatatttttctcccgtttcaattttaaattagcaaccacataatatcacaaaattatttctccat 24198499  T
Q  411 actttgatttattcttatttattttaagaaactctctgatttattctttggattaccaagaacttggttggtttgatgannnnnnnnaaggattattcaa 510  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||        |||||||||| ||    
T  24198500 acttcgatttattcttatttgttttaagaaactctcttatttatgctttggattgccaagaacttggttggtttgatgattttttttaaggattatttaa 24198599  T
Q  511 ttatcaattggttaccgagaatagtagaaacctgaactaaaaatgtgatgaggcagatgtagcgagtcattgaagaaacatgaaaaagaactacaaatta 610  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  24198600 ttatcaattggttactgagaatagtagaaacctgaactaaaaatgtgatga-acagatgtagcgagtcattgaagaaacatgaaaaagaactacaaatta 24198698  T
Q  611 tgagatctaaccgaacacaaattactgtttagtttgagttgttca 655  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  24198699 tgagatctaaccgaacacaaattactgttttttttgagttgttca 24198743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 250 - 343
Target Start/End: Complemental strand, 24197779 - 24197686
Alignment:
Q  250 aaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagcatatctgaa 343  Q
    |||||||||||||||| |||| |||||||||||||| |||||||||| | ||||| |||||||| |||| |||||||||||||||||| |||||    
T  24197779 aaatctcagcccttaatctttgttttgccacatgtcttgcatccaaagtctaaatagactaaattgagctttaggtaaatggagcatacctgaa 24197686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 395
Target Start/End: Original strand, 18860315 - 18860345
Alignment:
Q  365 aattttaaattagcaaccacataatatcaaa 395  Q
    |||||||||||||||||||||||||||||||    
T  18860315 aattttaaattagcaaccacataatatcaaa 18860345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 395
Target Start/End: Complemental strand, 23161429 - 23161399
Alignment:
Q  365 aattttaaattagcaaccacataatatcaaa 395  Q
    |||||||||||||||||||||||||||||||    
T  23161429 aattttaaattagcaaccacataatatcaaa 23161399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 22748662 - 22748614
Alignment:
Q  272 ttttgccacatgtcctgcatccaaaatataaatggactaaatggagcat 320  Q
    |||||||||||||| ||||||||||   |||||||| ||||||||||||    
T  22748662 ttttgccacatgtcttgcatccaaatcttaaatggagtaaatggagcat 22748614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 11 - 655
Target Start/End: Original strand, 43449884 - 43450527
Alignment:
Q  11 gagaagaagaaactaatttatttcaaaagatgagaagaacaaactaatttattttgagtggtggttcagcggtgacagcgatgaagacatcaaacaacaa 110  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  43449884 gagaagaataaactaatttatttcaaaagatgagaagaacaaactaatttattttgagcggtggttcagcggtgacagcgatgaagacattaaacaacaa 43449983  T
Q  111 cgatgacggcgacatggtggaggttgtcggtgagggggagaggaagagtggtggttgtgggagaagaagggaacgtgagaagaagaaactaatttatttt 210  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43449984 cgatgacggcgacatagtggaggttgtcggtgagggggagaggaagagtggtggttgtgggggaagaagggaacgtgagaagaagaaactaatttatttt 43450083  T
Q  211 aatttaataaataatacttgtagtcttgtattttattttaaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggacta 310  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43450084 aatttaataaagaatacttgtagtcttgtattttattttaaatctcagcctttaaactttattttgccacatgtcctccatccaaaatataaatggacta 43450183  T
Q  311 aatggagcattaggtaaatggagcatatctgaactcatatttttctcccgtttcaattttaaattagcaaccacataatatcaaaaaattatttctccat 410  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43450184 aatggagcattaggtaaatggagcatacctgaactcatatttttctcccgtttcaattttaaattagcaaccacataatataaaaaaattatttctccat 43450283  T
Q  411 actttgatttattcttatttattttaagaaactctctgatttattctttggattaccaagaacttggttggtttgatgannnnnnnnaaggattattcaa 510  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        |||||||||| ||    
T  43450284 actttgatttattcttatttgttttaagaaactctctgatttatgctttggattaccaagaacttggttggtttgatgattttttttaaggattatttaa 43450383  T
Q  511 ttatcaattggttaccgagaatagtagaaacctgaactaaaaatgtgatgaggcagatgtagcgagtcattgaagaaacatgaaaaagaactacaaatta 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  43450384 ttatcaattggttaccgagaatagtagaaacctgaactaaaaatgtgatga-acagatatagcgagtaattgaagaaacatgaaaaagaactacaaatta 43450482  T
Q  611 tgagatctaaccgaacacaaattactgtttagtttgagttgttca 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43450483 tgagatctaaccgaacacaaattactgtttagtttgagttgttca 43450527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 250 - 344
Target Start/End: Complemental strand, 43449563 - 43449469
Alignment:
Q  250 aaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagcatatctgaac 344  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||||   ||||| |||||||| |||| |||||||||||||||||| ||||||    
T  43449563 aaatctcagcccttaatctttgttttgccacatgtcttgcatccaaagcctaaatagactaaattgagctttaggtaaatggagcatacctgaac 43449469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 395
Target Start/End: Original strand, 37262925 - 37262955
Alignment:
Q  365 aattttaaattagcaaccacataatatcaaa 395  Q
    |||||||||||||||||||||||||||||||    
T  37262925 aattttaaattagcaaccacataatatcaaa 37262955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 7388510 - 7388446
Alignment:
Q  273 tttgccacatgtcctgcatccaaaatat-aaatggactaaatggagcattaggtaaatggagcat 336  Q
    ||||||||||||| |||||||||| | | |||||| |||||||||||||||  ||||| ||||||    
T  7388510 tttgccacatgtcttgcatccaaatttttaaatgggctaaatggagcattacctaaattgagcat 7388446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 31194039 - 31193964
Alignment:
Q  272 ttttgccacatgtcctgcatccaaaatataaatggactaaatggagcattag-gtaaatggagcatatctgaactca 347  Q
    |||||||||||||| ||||||||||   |||||||| |||||||||| ||||  ||||||||||||| | |||||||    
T  31194039 ttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagc-ttagcctaaatggagcatacccgaactca 31193964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 30552684 - 30552790
Alignment:
Q  241 ttttattttaaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagcatatct 340  Q
    |||| |||||||||| | ||||| ||  || ||||||||| ||||||||||||| ||  ||||||||||||||||||||||| ||||||| | |||| ||    
T  30552684 tttttttttaaatcttaacccttgaatattcttttgccacgtgtcctgcatccataacttaaatggactaaatggagcattatgtaaatgaaacatacct 30552783  T
Q  341 gaactca 347  Q
    |||||||    
T  30552784 gaactca 30552790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 51243262 - 51243214
Alignment:
Q  300 taaatggactaaatggagcattaggtaaatggagcatatctgaactcat 348  Q
    |||||||||||||||||||| | | ||||||||||||| || |||||||    
T  51243262 taaatggactaaatggagcaatggctaaatggagcatacctaaactcat 51243214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 249 - 343
Target Start/End: Complemental strand, 35274538 - 35274444
Alignment:
Q  249 taaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagcatatctgaa 343  Q
    ||||||||| ||||| || || ||| ||||||||||| | |||||||| | ||||||||||||||||| |||||  ||||||||||||| |||||    
T  35274538 taaatctcaacccttgaatttaattatgccacatgtcttccatccaaagtttaaatggactaaatggaacattacctaaatggagcatacctgaa 35274444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 11376178 - 11376226
Alignment:
Q  289 catccaaaatataaatggactaaatggagcattaggtaaatggagcata 337  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  11376178 catccataatttaaatggactaaatagagcattaggtaaatggagcata 11376226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 34937491 - 34937412
Alignment:
Q  270 tattttgccacatgtcctgcatccaaaata-taaatggactaaatggagcattaggtaaatggagcatatctgaactcat 348  Q
    |||||||||||||||| |||||||| ||   ||||| ||||||||||| ||||   ||||||||||||||||||||||||    
T  34937491 tattttgccacatgtcttgcatccataaccctaaatagactaaatggaacattgtctaaatggagcatatctgaactcat 34937412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 395
Target Start/End: Original strand, 10040244 - 10040274
Alignment:
Q  365 aattttaaattagcaaccacataatatcaaa 395  Q
    |||||||||||||||||||||||||||||||    
T  10040244 aattttaaattagcaaccacataatatcaaa 10040274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 395
Target Start/End: Original strand, 11372276 - 11372306
Alignment:
Q  365 aattttaaattagcaaccacataatatcaaa 395  Q
    |||||||||||||||||||||||||||||||    
T  11372276 aattttaaattagcaaccacataatatcaaa 11372306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 46883639 - 46883687
Alignment:
Q  272 ttttgccacatgtcctgcatccaaaatataaatggactaaatggagcat 320  Q
    |||||||||||||| ||||||||||   |||||||| ||||||||||||    
T  46883639 ttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcat 46883687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 344
Target Start/End: Original strand, 17737507 - 17737602
Alignment:
Q  249 taaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagcatatctgaac 344  Q
    ||||||||| || ||||| || ||||||| ||||||| | ||| |||||  |||||||| ||||||||||||||  ||||||||||||| ||||||    
T  17737507 taaatctcaacctttaaatttaattttgctacatgtctttcattcaaaacctaaatggattaaatggagcattacctaaatggagcatacctgaac 17737602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 395
Target Start/End: Complemental strand, 24260160 - 24260126
Alignment:
Q  361 tttcaattttaaattagcaaccacataatatcaaa 395  Q
    |||||||||||||||||||||||||||||||||||    
T  24260160 tttcaattttaaattagcaaccacataatatcaaa 24260126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 346
Target Start/End: Complemental strand, 17737075 - 17736978
Alignment:
Q  249 taaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagcatatctgaactc 346  Q
    ||||||||| |||||||| |  ||||||||||||||| | |||| ||||   ||||||||||||| ||  ||||  ||||||||||||| ||||||||    
T  17737075 taaatctcaacccttaaattgaattttgccacatgtctttcatctaaaactaaaatggactaaatagaatattacctaaatggagcatacctgaactc 17736978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 347
Target Start/End: Complemental strand, 22563311 - 22563209
Alignment:
Q  245 attttaaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattag-gtaaatggagcatatctgaa 343  Q
    |||| |||||||| || |||||  || |||||||||||||| ||||||||||   |||||||| |||||||||| ||||  ||||||||||||| | |||    
T  22563311 atttaaaatctcaaccgttaaatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagc-ttagcctaaatggagcatacccgaa 22563213  T
Q  344 ctca 347  Q
    ||||    
T  22563212 ctca 22563209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 395
Target Start/End: Original strand, 24251418 - 24251448
Alignment:
Q  365 aattttaaattagcaaccacataatatcaaa 395  Q
    |||||||||||||||||||||||||||||||    
T  24251418 aattttaaattagcaaccacataatatcaaa 24251448  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 33076167 - 33076265
Alignment:
Q  247 tttaaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagcatatctgaact 345  Q
    ||||||||||||||||||||  |||||||||| |||||| ||||| ||  |  |||||| |||||||| ||||||   ||||||||||||| |||||||    
T  33076167 tttaaatctcagcccttaaatattattttgccgcatgtcgtgcattcatcacctaaatgaactaaatgaagcattgcctaaatggagcatacctgaact 33076265  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 395
Target Start/End: Complemental strand, 21110480 - 21110450
Alignment:
Q  365 aattttaaattagcaaccacataatatcaaa 395  Q
    |||||||||||||||||||||||||||||||    
T  21110480 aattttaaattagcaaccacataatatcaaa 21110450  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 9135044 - 9135088
Alignment:
Q  300 taaatggactaaatggagcattaggtaaatggagcatatctgaac 344  Q
    |||||||||||||| ||||||||| |||||||||| || ||||||    
T  9135044 taaatggactaaattgagcattagctaaatggagcgtacctgaac 9135088  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 14999243 - 14999164
Alignment:
Q  274 ttgccacatgtcctgcatccaaaatataaatggactaaatggagcattagg-taaatggagcatatctgaactcatatttt 353  Q
    |||||||||||| ||||||||||   |||||||| ||||| |||| ||||  ||||||||||||||| |||||| ||||||    
T  14999243 ttgccacatgtcttgcatccaaaccctaaatggagtaaattgagc-ttagcctaaatggagcatatccgaactcctatttt 14999164  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 2515115 - 2515012
Alignment:
Q  246 ttttaaatctcagcccttaaactttattttgccacatgtcctgcatccaaaata-taaatggactaaatggagcattaggtaaatggagcatatctgaac 344  Q
    |||||||||||| | ||||||  || |||||||| ||||| | ||| ||| ||  ||||||||||||||||| || || |||||||||||||||||| ||    
T  2515115 ttttaaatctcaactcttaaatctttttttgccatatgtcattcattcaagatcctaaatggactaaatggaacaatatgtaaatggagcatatctggac 2515016  T
Q  345 tcat 348  Q
    ||||    
T  2515015 tcat 2515012  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 17914975 - 17915049
Alignment:
Q  272 ttttgccacatgtcctgcatccaaaatataaatggactaaatggagcattag-gtaaatggagcatatctgaactc 346  Q
    |||||||||||||| |||||||||| | |||||||| |||||||| | ||||  ||||||||||||||| ||||||    
T  17914975 ttttgccacatgtcttgcatccaaactttaaatggagtaaatggaac-ttagcctaaatggagcatatccgaactc 17915049  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 348
Target Start/End: Original strand, 32160998 - 32161097
Alignment:
Q  249 taaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagcatatctgaactcat 348  Q
    ||||||||| |||||||| || || |||||||||||| |  ||| ||||  |||||||||||||| ||||  ||  ||||||||||||| || |||||||    
T  32160998 taaatctcaacccttaaaattaatcttgccacatgtcttctatctaaaacttaaatggactaaatagagctatacataaatggagcatacctaaactcat 32161097  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 24145557 - 24145511
Alignment:
Q  300 taaatggactaaatggagcattaggtaaatggagcatatctgaactc 346  Q
    ||||||||||||||||||||  ||||||||||||||||  |||||||    
T  24145557 taaatggactaaatggagcacaaggtaaatggagcatacatgaactc 24145511  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 1856708 - 1856777
Alignment:
Q  272 ttttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagcatatctg 341  Q
    |||||||||||||| | ||||||| |  |||||||  |||||||| |||  |||||||||||||||||||    
T  1856708 ttttgccacatgtcattcatccaagacctaaatggtgtaaatggaacatgtggtaaatggagcatatctg 1856777  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 8538327 - 8538400
Alignment:
Q  245 attttaaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagc 318  Q
    |||| |||||||||||||| |   || ||||| |||||||| ||||||||||   |||||||||||||||||||    
T  8538327 atttgaaatctcagcccttcattatttttttgacacatgtcttgcatccaaaccctaaatggactaaatggagc 8538400  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 346
Target Start/End: Complemental strand, 32160408 - 32160311
Alignment:
Q  249 taaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagcatatctgaactc 346  Q
    ||||||||| |||||||| || || |||||||||||| | |||| |||   |||||||||||||||| ||  ||  |||||| |||||| ||||||||    
T  32160408 taaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggggctatacataaatgaagcatacctgaactc 32160311  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 32160901 - 32160949
Alignment:
Q  146 gggagaggaagagtggtggttgtgggagaagaagggaacgtgagaagaa 194  Q
    ||||||||||| ||||| |||||||||| |||||||| |||||| ||||    
T  32160901 gggagaggaagggtggtagttgtgggagtagaagggagcgtgagcagaa 32160949  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 17186227 - 17186189
Alignment:
Q  300 taaatggactaaatggagcattaggtaaatggagcatat 338  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  17186227 taaatggactaaatagagcattaggtaaatggagcatat 17186189  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 9905265 - 9905208
Alignment:
Q  289 catccaaaatataaatggactaaatggagcattaggtaaatggagcatatctgaactc 346  Q
    |||||||| | |||||||||||||| ||||||||  ||||||||||||| ||||||||    
T  9905265 catccaaagtttaaatggactaaattgagcattacctaaatggagcatacctgaactc 9905208  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 34589383 - 34589336
Alignment:
Q  300 taaatggactaaatggagcattaggtaaatggagcatatctgaactca 347  Q
    ||||||||||||||||||||||  |||||||||||||| ||| |||||    
T  34589383 taaatggactaaatggagcattgagtaaatggagcatacctggactca 34589336  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 343
Target Start/End: Original strand, 45560592 - 45560699
Alignment:
Q  236 ttgtattttattttaaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagca 335  Q
    |||| ||| ||||||||| |||||||||  |  || ||||||||||||||  |||||||  |  ||||||||||||||||| ||||   |||||||||||    
T  45560592 ttgtttttaattttaaatttcagcccttggatgtttttttgccacatgtctcgcatccatgacctaaatggactaaatggaacattgcctaaatggagca 45560691  T
Q  336 tatctgaa 343  Q
    || |||||    
T  45560692 tacctgaa 45560699  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 48737958 - 48738004
Alignment:
Q  301 aaatggactaaatggagcattaggtaaatggagcatatctgaactca 347  Q
    ||||||||||||||||||||||  ||||||||||||| || ||||||    
T  48737958 aaatggactaaatggagcattacctaaatggagcatacctaaactca 48738004  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 19549340 - 19549385
Alignment:
Q  276 gccacatgtcctgcatccaaaatataaatggactaaatggagcatt 321  Q
    |||||||||| |||||||| |  |||||||||||||||||||||||    
T  19549340 gccacatgtcatgcatccagaccataaatggactaaatggagcatt 19549385  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 48737302 - 48737257
Alignment:
Q  301 aaatggactaaatggagcattaggtaaatggagcatatctgaactc 346  Q
    ||||||||||||||||||||||  ||||||||||||| || |||||    
T  48737302 aaatggactaaatggagcattacctaaatggagcatacctaaactc 48737257  T

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Target: scaffold0417 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 346
Target Start/End: Original strand, 9280 - 9377
Alignment:
Q  249 taaatctcagcccttaaactttattttgccacatgtcctgcatccaaaatataaatggactaaatggagcattaggtaaatggagcatatctgaactc 346  Q
    ||||||||| ||||| || || ||||||||||||||| | ||||| ||   |||||||| |||||||||||  |  ||||||||||||| ||||||||    
T  9280 taaatctcaacccttgaatttaattttgccacatgtcttccatccgaagcttaaatggattaaatggagcaaaacctaaatggagcatacctgaactc 9377  T

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