View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_20 (Length: 388)
Name: NF10273_high_20
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 45970203 - 45969851
Alignment:
| Q |
16 |
catatcttaagaggcatttgaccaacaagatcgtcccattttgattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatgaaacaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45970203 |
catatcttaagaggcatttgaccaacaagatcgtcccattttgattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatgaaacaa |
45970104 |
T |
|
| Q |
116 |
tagaccaaagatttccaagcatgaaaaacctgaaatccatgtgagctggttgtaaatttcctatcaaataaccaccttcatctggaatccaatccattaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45970103 |
tagaccaaagatttccaagcatgaaaaacctgaaatccatgtgagctggttgtaaatttcctatcaaataaccaccttcttctggaatccaatccattaa |
45970004 |
T |
|
| Q |
216 |
ccacattggaatttgttccggatagatgttgaacttgttagttgcatctaaagagtactcttctgttttatacctatatatttcattcacttttctcata |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45970003 |
ccacattggaatttgttccggatagatgttgaacttgttagttgcatctaaagagtactcttctgttttatacctgtatatttcattcacttttctcata |
45969904 |
T |
|
| Q |
316 |
tccaaccaataatactctctaatatggaaggacaatgcacttagtctgttgtt |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45969903 |
tccaaccaataatactctctaatatggaaggacaatgcacttagtctgttgtt |
45969851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 37652679 - 37653031
Alignment:
| Q |
16 |
catatcttaagaggcatttgaccaacaagatcgtcccattttgattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatgaaacaa |
115 |
Q |
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||||||||||||||||| || || ||||| ||||||||||||| |||||| |||||||||| || || |||||||||||| || | | |||||||| || |
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| T |
37652679 |
catatcttaagaggcatatgccccacaagttcgtcccattttgcttctatcagattcaaaatagcctcgttctgtcttggagtgctcagagatgaaataa |
37652778 |
T |
|
| Q |
116 |
tagaccaaagatttccaagcatgaaaaacctgaaatccatgtgagctggttgtaaatttcctatcaaataaccaccttcatctggaatccaatccattaa |
215 |
Q |
| |
|
| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| || | ||| ||||||| || |||||||||||||||| |
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| T |
37652779 |
tggaccaaagatttccaagtgtgaaaaaccggaaatccatgtgagctggttgtagatttccaattagatatccacctttttcaggaatccaatccattac |
37652878 |
T |
|
| Q |
216 |
ccacattggaatttgttccggatagatgttgaacttgttagttgcatctaaagagtactcttctgttttatacctatatatttcattcacttttctcata |
315 |
Q |
| |
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||| | ||||||||||| |||||||||||||| ||||| | ||||| | |||||||||||||| || || |||||||||||||| | ||| ||||| |
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| T |
37652879 |
ccagaaaggaatttgttcaggatagatgttgaatttgttgatggcatccatggagtactcttctgtgttgtatctatatatttcattaatctttttcata |
37652978 |
T |
|
| Q |
316 |
tccaaccaataatactctctaatatggaaggacaatgcacttagtctgttgtt |
368 |
Q |
| |
|
|||| ||||||||| | |||||| ||||| || | |||||| ||||||||||| |
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|
| T |
37652979 |
tccacccaataatattgtctaatgtggaacgatagtgcactcagtctgttgtt |
37653031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 4319235 - 4319057
Alignment:
| Q |
16 |
catatcttaagaggcatttgaccaacaagatcgtcccattttgattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatgaaacaa |
115 |
Q |
| |
|
||||| || |||||||||||||||| | ||| |||||||| | ||||||| |||||||| || || ||||||| ||| |||||||| || |||| |
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| T |
4319235 |
catattttgagaggcatttgaccaatgatatcatcccatttggcgtctattaaattcaaaatgccctcattttgtcttgttgtgcctaaagaagagacaa |
4319136 |
T |
|
| Q |
116 |
tagaccaaagatttccaagcatgaaaaacctgaaatccatgtgagctggttgtaaatttcctatcaaataaccaccttc |
194 |
Q |
| |
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| | |||||| ||||| || ||||||||||||| ||||| ||||| ||||| | ||| ||||| || || |||||||| |
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| T |
4319135 |
tggcccaaaggtttccgagtgtgaaaaacctgaagtccatatgagcaggttgcagattgcctatgaagtatccaccttc |
4319057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 170
Target Start/End: Original strand, 38510610 - 38510641
Alignment:
| Q |
139 |
aaaaacctgaaatccatgtgagctggttgtaa |
170 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
38510610 |
aaaaacctgaaatccatgtgagctggttgtaa |
38510641 |
T |
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