View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_21 (Length: 376)
Name: NF10273_high_21
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 4294753 - 4294400
Alignment:
| Q |
1 |
ttcttatttgtttgagagatatggtttacctatccttccttttctccaagaaccgatgaagtgaagctttcctagtcattggtaaatctgaatatataaa |
100 |
Q |
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| T |
4294753 |
ttcttatttgtttgagagatatggtttacctatccttccttttctccaagaaccgatgaagtgaagctttcctagtcattggtaaatctgaatatataaa |
4294654 |
T |
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| Q |
101 |
taggaaagtcatgaatatgaaaaatacacataaaaccattacacaaatcaagcacatgcgtatccactcaaatagatatccaactannnnnnnaccataa |
200 |
Q |
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| T |
4294653 |
taggaaagtcatgaatatgaaaa--acacataaaatcattacacaaatcaagcacatgcgtatccactcaaatagatatccaactatttttttaccataa |
4294556 |
T |
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| Q |
201 |
ataacaggtgtggatggtatttgaagataattgttggctgaatttctagcaagaaatgatgggttactctgagcaaatctgaaagcatagttgttattgt |
300 |
Q |
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| T |
4294555 |
ataacaggtgtggatggcatttgaagagaattgttggctgaatttatagcaagaaatgatgggttactctgagcaaatctgaaagcatagttgttattgt |
4294456 |
T |
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| Q |
301 |
tgtggttttgagaatgagaggtagtagtagtagttcctttggtgcaaaagaccatgatg |
359 |
Q |
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| T |
4294455 |
tgtggttttgagaatgagag---gtaggagtagttcctttggtgcaaaagaccatgatg |
4294400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 26 - 313
Target Start/End: Complemental strand, 4301260 - 4300971
Alignment:
| Q |
26 |
ttacctatccttccttttctccaagaaccgatgaagtgaagctttcctagtcattggtaaatctgaata--tataaataggaaagtcatgaatatgaaaa |
123 |
Q |
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| T |
4301260 |
ttacctatccttccttttctccaagaaccgatgaagtgaagctttcctagtcattggtaaatctgaatatatataaataggaaagtcatgaatatgaaaa |
4301161 |
T |
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| Q |
124 |
atacacataaaaccattacacaaatc--aagcacatgcgtatccactcaaatagatatccaacta-nnnnnnnaccataaataacaggtgtggatggtat |
220 |
Q |
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| T |
4301160 |
acacacataaaatcattacacaaatcaaaagcaca---ccactcattcaaatagttatccaattattgtttttaccataaataacaggtgaggacggtac |
4301064 |
T |
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| Q |
221 |
ttgaagataattgttggctgaatttctagcaagaaatgatgggttactctgagcaaatctgaaagcatagttgttattgttgtggttttgaga |
313 |
Q |
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| T |
4301063 |
ttgaacagaattgttggcagaatttctagcaagaaatgatgggtggctctgagcaaatctgaaagcatagttgttatttttgtggtttcgaga |
4300971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 4311660 - 4311570
Alignment:
| Q |
26 |
ttacctatccttccttttctccaagaaccgatgaagtgaagctttcctagtcattggtaaatctgaatatataaataggaaagtcatgaat |
116 |
Q |
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| T |
4311660 |
ttacctatccttccttttctccaagaaccgatgaagtgaagctttcctagtcattggtaaatctgaatacataaaaaggaacttcatgaat |
4311570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 4306303 - 4306222
Alignment:
| Q |
26 |
ttacctatccttccttttctccaagaaccgatgaagtgaagctttcctagtcattggtaaatctgaatatataaataggaaa |
107 |
Q |
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| T |
4306303 |
ttacctatccttccttttctccaagaaccgatgaagtgaagctttcctagtcatcggtaaatctgaatacataaaaaggaaa |
4306222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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