View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_22 (Length: 376)
Name: NF10273_high_22
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 34567436 - 34567089
Alignment:
| Q |
17 |
atggtctccatttttccaaatttagtgag-actaaaattgtgaatcttttnnnnnnnnngatgaaacgagtaagcatctaagcataaaattcgcgcgaca |
115 |
Q |
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| T |
34567436 |
atggtctccatttttccaaatttagtgaggactaaaattgtgaatcttttaaaaaaaa-gatgaaacgagtaatcatctaagcataaaattcgcgcgaca |
34567338 |
T |
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| Q |
116 |
atattagtacaataattggaaaattaaactaatgtatatattttttgattttgcagatttgatagagatttgagatggagaactggtgtaaacatagttc |
215 |
Q |
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| T |
34567337 |
atattagtacaataattggaaaattaaactaatgtatatattttttgattttgcagatttgatagagatttgagatggagaactggtgtaaacataattc |
34567238 |
T |
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| Q |
216 |
caatccattgtgatagttcaaacaattttcaaatcacacttgaagcattagaaactgcatacaaaaatgcagaatccatgaacatgaaagtaaaagcagt |
315 |
Q |
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| T |
34567237 |
caatccattgtgatagctcaaacaattttcaaatcacacttgaagcattagaaactgcatacaaaaatgcagaatccatgaacatgaaagtaaaagcagt |
34567138 |
T |
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| Q |
316 |
acttataaccaacccatcaaatccattaggcatatcgattcaacgttca |
364 |
Q |
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| T |
34567137 |
acttataaccaacccatcaaatccattaggcatatcgattcaacgttca |
34567089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 306
Target Start/End: Complemental strand, 42789616 - 42789474
Alignment:
| Q |
164 |
ttttgcagatttgatagagatttgagatggagaactggtgtaaacatagttccaatccattgtgatagttcaaacaattttcaaatcacacttgaagcat |
263 |
Q |
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| T |
42789616 |
ttttgtaggtttgatagagacttaaggtggagaactggtgtaaacatagtgccaattcactgcaacagatcaaacaattttcaaattacaccaaaagctt |
42789517 |
T |
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| Q |
264 |
tagaaactgcatacaaaaatgcagaatccatgaacatgaaagt |
306 |
Q |
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| T |
42789516 |
tagaagcagcttacaaagaagcagaatcaatgaacatgaaagt |
42789474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 306
Target Start/End: Complemental strand, 42799155 - 42799012
Alignment:
| Q |
164 |
ttttgcagatttgatagagatttgagatggagaactggtgtaaacatagttccaatccattgtgatagttcaaacaattttcaaatcaca-cttgaagca |
262 |
Q |
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| T |
42799155 |
ttttgtaggtttgatagagacttaaggtggagaactggtgtaaacatagtgccaattcactgcaacagatcaaacaattttcaaattacaccaaaaagct |
42799056 |
T |
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| Q |
263 |
ttagaaactgcatacaaaaatgcagaatccatgaacatgaaagt |
306 |
Q |
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| T |
42799055 |
ttagaagcagcttacaaagaagcagaatcaatgaacatgaaagt |
42799012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 1462267 - 1462339
Alignment:
| Q |
216 |
caatccattgtgatagttcaaacaattttcaaatcacacttgaagcattagaaactgcatacaaaaatgcagaa |
289 |
Q |
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| T |
1462267 |
caatccagtgtgacagctcaaacaattttcaaatcacactt-aagcattaaaaattgtatacaaaaatgcagaa |
1462339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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