View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_25 (Length: 356)
Name: NF10273_high_25
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 17478435 - 17478765
Alignment:
| Q |
13 |
atacctgttcttgcatagcctgcctgcacttgtttgttgtgctttgacannnnnnngtatacctgaaaaggaattgataaactgatatatattacctagg |
112 |
Q |
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| T |
17478435 |
atacctgttcttgcatagcctgc----acttgtttgttgtgctttgacatttttttgtatacctgaaaaggaattgataaactgatatatattacctagg |
17478530 |
T |
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| Q |
113 |
acaaaaattctaaaaacaccatattttggaatggagggagtaccatattgtgatcacataccttggaaaatacttcaacgagggcagtcttctcgtggaa |
212 |
Q |
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| T |
17478531 |
acaaaaattctaaaaacaccatattttgaaatggagggagtaccatcctgtgatcaaataccttggaaaatacttcaacgagggcagtcttctcgtggaa |
17478630 |
T |
|
| Q |
213 |
attgtacatggctaatctttcagaatttcttgccacgtctcgagctaatttcttttcctctaaagccctctttatgcaacacaaggaaagccacagcacg |
312 |
Q |
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| T |
17478631 |
attgtgcatggctaatctttcagaatttcttgccacgtctcgagctaatttcttttcctctaaagccctctttatgcaagacaaggaaagccacagcacg |
17478730 |
T |
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| Q |
313 |
aacatctaaaacaagcatgcagtttttgttcatct |
347 |
Q |
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| T |
17478731 |
aacatctaaaacaagcatgcagtttttgttcatct |
17478765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 116 - 297
Target Start/End: Original strand, 36890295 - 36890476
Alignment:
| Q |
116 |
aaaattctaaaaacaccatattttggaatggagggagtaccatattgtgatcacataccttggaaaatacttcaacgagggcagtcttctcgtggaaatt |
215 |
Q |
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| T |
36890295 |
aaaattctaaaaacaccatattttggaatggagggagtcatatccggtgacaacataccttggcataaacttcaacaagggcagtcttcttgtggaaatt |
36890394 |
T |
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| Q |
216 |
gtacatggctaatctttcagaatttcttgccacgtctcgagctaatttcttttcctctaaagccctctttatgcaacacaag |
297 |
Q |
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|| |||| |||| ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
36890395 |
gtgcatgactaacctttcagcatttcttgccttctctcgagctaatttcttttcctccaaagccctctttatgcaagacaag |
36890476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 119 - 291
Target Start/End: Complemental strand, 36905781 - 36905609
Alignment:
| Q |
119 |
attctaaaaacaccatattttggaatggagggagtaccatattgtgatcacataccttggaaaatacttcaacgagggcagtcttctcgtggaaattgta |
218 |
Q |
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| T |
36905781 |
attctaaaaacaccatagtattgtatggagggaataccgtcctatgacaacataccttggaaataacttcaacaagggcagtcttctcatggaaattgtg |
36905682 |
T |
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| Q |
219 |
catggctaatctttcagaatttcttgccacgtctcgagctaatttcttttcctctaaagccctctttatgcaa |
291 |
Q |
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| T |
36905681 |
catggctaatctttcagcatttcttgcctcctctcgagctaatttcttttcctctagagctctcttcatgcaa |
36905609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 36889827 - 36889876
Alignment:
| Q |
69 |
gtatacctgaaaaggaattgataaactgatatatattacctaggacaaaa |
118 |
Q |
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| T |
36889827 |
gtatacctgaaaaggatttgataaagtgatctatattatctatgacaaaa |
36889876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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